Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01022 ATGGCTCCTTCCACCTCATCGGCGGCGACTCAGGGACTCATCCGCTTCCGCCGGCGCACGCATGCACCGCGTCTCCCGTACAGGTCGTCGCCGGTGAAGAAGTACAGGTCGATGGTGGATGTATTGGCGAGAGCGCCGTACGCGGAGGTGGAACCGGAGGAGTGTGACGTGAACTGCGAGCAATGCGGTTCCGATGAGTCGCCGGATGAGCTGTTATTATGCGATAAATGCAACAGAGGATATCACATGAAATGCGTGAGGCCAATCGTGGTGAGAGTACCGATTGGATCATGGCTTTGCCCTAAGTGTTCGGGAGAGAAGAGAGTGAAAAGTTTTTCTCAGAAGAAGATAATTGATTTCTTCGGGATTCAGAAGTCTTTTGATGATTTCAAACACAAAGGTTCTTCTTCTTCTTCTTCTTCTTCTCAGGATGCTAAGAAGCGGAGGAGACGTTCAGGATCTCTGGTATTACAAAAGAAAAAGAGGAGACTATTACCATTTATTCCTTCAGAAGATCCTTCCCAGAGACTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTGCATATGAAATTCAGTGACCACCTCACCTACATGCCTGGAATGGCTCCTAGATCTGCTAATCAAGCCAATTTAGAAAACGGTGGCATGCAGGTTCTTTCCAAGGAAGATATGGAGACCTTAGACCACTGCAGAGCTTTGTCTAAAAGAGGCGAATGTGCTCCTTTTATGGTTGTTTTTGATTCGTGTGAAGGCTTTACTGTGGAGGCTGATGGCCCTATCAAGGATATGACATTAATCGCTGAATACACTGGTGAAGTGGATTACATTAAGAACCGAGAATCTGATGATTGTGACAGTATGATGACGCTACTTCTTGCAACAGATCCTTCAAAAAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTTATCAATGGCATCAACAATCACACTCAGGAAGGTAAGAAGAAGCAAAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCCGGGTCTTATTGGTTGCTACTCGTGATATTTGCAAGGGGGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATACCCGACTCATCATTTTGTCTGA 1134 0.4515 MAPSTSSAATQGLIRFRRRTHAPRLPYRSSPVKKYRSMVDVLARAPYAEVEPEECDVNCEQCGSDESPDELLLCDKCNRGYHMKCVRPIVVRVPIGSWLCPKCSGEKRVKSFSQKKIIDFFGIQKSFDDFKHKGSSSSSSSSQDAKKRRRRSGSLVLQKKKRRLLPFIPSEDPSQRLKQMGSLASALTALHMKFSDHLTYMPGMAPRSANQANLENGGMQVLSKEDMETLDHCRALSKRGECAPFMVVFDSCEGFTVEADGPIKDMTLIAEYTGEVDYIKNRESDDCDSMMTLLLATDPSKSLVICADKRGNIARFINGINNHTQEGKKKQNCKCVRYNVNGECRVLLVATRDICKGERLYYDYNGYEHEYPTHHFV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01022 377 SUPERFAMILY FYVE/PHD zinc finger 54 109 IPR011011 -
Rops10g01022 377 SMART PHD_3 58 104 IPR001965 -
Rops10g01022 377 ProSiteProfiles SET domain profile. 244 365 IPR001214 GO:0005515
Rops10g01022 377 CDD PHD_RSF1 58 103 - -
Rops10g01022 377 CDD SET_ATXR5_6-like 240 377 - -
Rops10g01022 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 118 IPR013083 -
Rops10g01022 377 Pfam PHD-finger 59 104 IPR019787 -
Rops10g01022 377 SUPERFAMILY SET domain 236 365 IPR046341 -
Rops10g01022 377 MobiDBLite consensus disorder prediction 131 154 - -
Rops10g01022 377 ProSitePatterns Zinc finger PHD-type signature. 59 103 IPR019786 -
Rops10g01022 377 FunFam Histone-lysine N-methyltransferase ATXR5 149 377 - -
Rops10g01022 377 Gene3D SET domain 149 377 IPR046341 -
Rops10g01022 377 SMART set_7 243 371 IPR001214 GO:0005515
Rops10g01022 377 Pfam SET domain 283 365 IPR001214 GO:0005515
Rops10g01022 377 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 133 375 - -
Rops10g01022 377 ProSiteProfiles Zinc finger PHD-type profile. 56 106 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01022 Rops-Chr10 21784057 21788224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01022 31 138 C2H2 Transcription Factor Family AT3G01460 35.200 9.03e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops10g01022 SET 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01022 K24406 - tcc:18611813 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01022 10 21784057 21788224 Rops10g01022 10 21784057 21788224 ECH