Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01019 ATGAAAGTCTCCTCCCAAAACCTCCACACCGCCCGATCAATGCTGAACTCCTTTCTTGAAGCTTCCCTAGACAACCACACCCGCATCACCGTCGCTAAAAGCTGCCTCCAGGGCCTCCACTACTCCCGCCACCGCACCTCCCTCGCCGGCGACGCCCTCCCTCGCGGCAGGACCAAGGACGCGCGTGCATGGATGAGCGCCGCATTGGCATACCAATACGGCTGTTGGTCAGGGCTCAAGTACGTAAACGACACCCCATTGGTCGCTAAAACGATGTCGTTTCTTGACTCCCTCACGGGTCTCTCCAGCAACGCACTCAGCATGATGGTTTCCTACGATGTCTTCGGGAACGACACCGTTTCATGGAGGCCGCCTCTCACGGAGCGCAACGGCTTCTGGGAGCCGTCCGGGTCGGGTTCCGGACCCGGGAGAATGCCCGCGAAACTTACGCCGGACGTTACGGTGTGTAAGGGTGGGGCCCGGGGTTGTTACGCGACGGTTCAGGAAGCGGTTGACGCGGCGCCGGATAATGGGGAAGGGAGGTTCGTGATACACATAAAGGAAGGGGTTTATGAGGAGAGGGTTAGGGTTCCGTTAAAGAAGAGGAACGTGGTGTTCTTGGGTGATGGCATGGGTAAAACTGTGATCACGGGTTCTGCAAACGTGGGGCAGCCTGGGATGACAACCTATAACTCTGCCACAGTCGGGGTTGTTGGGGATGGATTCATGGCGAAGGATCTAACAATCCAGAACACAGCAGGTGCTAATGCTCACCAAGCAGTAGCCTTCAGATCAGACAGTGACCTTTCTGTCATCGAGAATTGTGAATTCATAGGCAACCAAGATACTCTTTATGCTCATTCCCTGCGTCAATTTTATAAATCTTGCCGTATCATTGGCAATGTGGACTTCATCTTTGGAAACTCAGCATCAATCTTCCAAGATTGTGAAATCTTAGTCCGGCCCAGGCAAGCCAGGCCGGAGAAGGGTGAGAAGAATGCCATTGCTGCGCATGGCAGGACAGACCCTGCTCAGTCAACAGGCTTTGTTTTCCAGAACTGCTTGGTTAATGGTACTGATGAATATATGGCATTGTATTATAGCAAGCCTAAAGTACACAGGAACTATCTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATTCATTCATACTTGGAAGCCCTCATTACACCACAGGGTTGGTTGCCATGGGGTGGGGATTTTGCACTGAAGACACTTTACTATGGTGAATTTGAGAACTCGGGTCCTGGTTCTAATTTGACTCAGAGGGTGCCCTGGAGTAGCCAGGTCCCTGCTGAGCATGTGTTCACGTATTCAGTGCAGAGTTTCATTCAAGGAGATGATTGGATCCGTCAACTCAGCTTTTAG 1395 0.5219 MKVSSQNLHTARSMLNSFLEASLDNHTRITVAKSCLQGLHYSRHRTSLAGDALPRGRTKDARAWMSAALAYQYGCWSGLKYVNDTPLVAKTMSFLDSLTGLSSNALSMMVSYDVFGNDTVSWRPPLTERNGFWEPSGSGSGPGRMPAKLTPDVTVCKGGARGCYATVQEAVDAAPDNGEGRFVIHIKEGVYEERVRVPLKKRNVVFLGDGMGKTVITGSANVGQPGMTTYNSATVGVVGDGFMAKDLTIQNTAGANAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSASIFQDCEILVRPRQARPEKGEKNAIAAHGRTDPAQSTGFVFQNCLVNGTDEYMALYYSKPKVHRNYLGRPWKEYSRTVFIHSYLEALITPQGWLPWGGDFALKTLYYGEFENSGPGSNLTQRVPWSSQVPAEHVFTYSVQSFIQGDDWIRQLSF* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01019 464 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 108 IPR035513 -
Rops10g01019 464 CDD PMEI-like_3 1 109 - -
Rops10g01019 464 Gene3D - 146 464 IPR012334 -
Rops10g01019 464 Pfam Pectinesterase 152 456 IPR000070 GO:0030599|GO:0042545
Rops10g01019 464 PANTHER PECTINESTERASE 7 460 - -
Rops10g01019 464 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 111 IPR035513 -
Rops10g01019 464 Pfam Plant invertase/pectin methylesterase inhibitor 1 108 IPR006501 GO:0004857
Rops10g01019 464 SUPERFAMILY Pectin lyase-like 150 460 IPR011050 -
Rops10g01019 464 FunFam Pectinesterase 146 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01019 Rops-Chr10 21762137 21770280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01019 1 458 Carbohydrate Esterase AT5G09760 68.026 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01019 - - gmx:100802102 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01019 10 21762137 21770280 Rops10g01019 10 21762137 21770280 ECH