Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01017 ATGGTGGGTGGGGGAGGAGTGGGAGAGGAAGAGGAAGAGGAGGAGGAGGAAGAAGGAGGGAAGGGATGCCATGAAAAGGATGAGGAGGGTGGATCTGATCGGAAAAGAAAAGGGGAAAGAGACCGAATTAAAGAAAAAGGCAAAAATCCACTCACAGATAGATATTTGTTGACGTACGAAACAGAAGCGAAGCTCCGTTACTCTCTCTCTCTCTCTCTCTCTGCGATTCGACATGGCAAAATTGCAAGCTCAACTTTAGGGTTTCTCTCTCCACACTCTGTTCATCACTCACTCAGCACACTGCATTATTCGAAGAGAAGCATTACAGCTTTGGCAAGTGAGATGAGTGGAAGTGGCAGAAATCGCTCTTCAAAGTGGGATTTGAGAGAGGAGCCTGAATTTGCATCAGATAATAAGCAATCGCGGTCTGGGCGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCAAAATGGTCTTATTTGGAAGGAAATGATAAACTAAAACCTGGTATGGGATTTTCATTCAAGGAACCCTTTCCTGGAGGCAGAGGTTCAAATAAGGACGATACTACGGATAAAGACTATCGAGTTTTGGATGCAACAATGGACTGGGATGGGGATGGAAGTTACGGGAAAAAAATGTCTCCTTGGTCTGATGAATGGAAACATAAGAGACATAGTCAATCCCCCAAAAGTGGTTGGAGCAGGTCAGTCAGGAGAAGTCGGAGTAGGAGCCCTCCTCAAGGTTTTAGGTGGGATTCAGGAGCCAATGACAGAAATAGAATGCGGGCTGGAGGATCGACTCAACCATGCAGAGACTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCTGTGCCATTTTCTTCATCATGATAATCAAAAGCATGAAGATAGTTGGGAAAGTAGGCACAGGGAAGATGGAGCTCCCAGATATTCTGCTCCCCATGAAAGTAGGGACCATTCTCTTAAGAGTGGTAGATCTAACGAAGCTTGTATTAATTTTGCAAAAGGCAGGTGTAGAATGGGAGCATCATGCAATTATGTGCATCATAATGCTGATGGATATGGTAAAGTTTCTATGGATGATTTAACTAGAGAAAGGGAAATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCTGGGTGGCGGGCATGGGCCAAACCGCAGTAGTGATATTCCTTGCAAATTTTTTGCTAATGGAAATTGTCGTAACGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCAAGTAGGAGCCCTAATAGAAGATTAAGGGATGATAGGTGGGCAAGCAATCCAGGTGGAGATCATCAGATGATGGATAGACCAAAATTGAGTGATTCAGTTAGTCCTAATAGAAGGCTAAGAGATGATAAGTGGGGTTCAGATGGCAATATGGCTGATGCAGATAAAGTTTGGGACAGTCCAAAGGGGAATGATACAGTTGCTGTCTCTGATACTGCAAAGCTGGTTGAGGACAAAACTGGGAATGTGGGTGCCACAGAGCCAGGATTCACTGCTTGGCCTACGAGGGATGGATGGGGTCATAGTTTAGATAAGAGCAGAGTGCATGGTGAACCACCATTTTCAAGTGATAAGAAGGAAGGTGACCATTGGATAGCAGAAAATACTGGTCCCAACATGCATGGTTCCCAGTCAATAGATACAGACATTTGGCCGGGTGATGCAAAAATGTCTCCTGATTGGGATTATAGGGTGGGATCTTCCAGCCATATTGAAGAGCATGGACAGAATAAGCATGGGATAACCCAGGGTGGTACGTATTTAGCCACCTCTGAACATGACAGAATACCTGTTACTCCAGGACAAGGCTTTAATCTGAATGTGAATGTAAATTCTTTACATCCTTCAAGCCGCCATGCAGTTGCACAAAGTCAAGTGGCAGTTCCAATTCTTCCTTCAAGAGGAGGAATTGCTGATGGTATGCAGAACCAAGATGTCTTTACTGATAAAAAGTACCCTGTTGAACCAAATATCATGGATGCAGGATTACCACAAGTTAGTTCAAGAAATCCTCCAACTCAGAATGTGGTAAGCAAAGAACAGCTTGTTCAACTTACCAATATCTCAGCCTCTCTGGCTCATATCCTTGGAAGTGGTCAGCAGCTGCCGCAACTTTATGCTGCTTTAAATTCTCAAGATGCAAAGGATGCTCCCTCCCTAGCAAAAACTGAAGTGCCTGCTATGCCTGTTTCCAATACATTCAAGCCTGATCCTTCTGTTGGACTCCCAAAGCCGTATGATCCAATGGGTGATATTGAGCCAAAGAACGCTGATGCAAGTAGGGTCCCTCCAGCCATTCCTCTAAGTAAAAAACCTGCAGAAGATGAAGTAGAAATTCCATCACAGTTGTCTAATAAGGCTGCCTGCTCAGAAGCCCTTGTCAAGAATGATCATCTAGTCCAGTTGCAGTCAGGTCAAAACACTGAGGTTAATAAGGATAACAATGAAGTGGTATCTGAGGAAAGGAAAAATTCTCAAGATGATCATAAAAATAAAAAAGAGAACGGTCCTTTGGAAAACATGGACCCAGATGGGGGACCTGATGAGGCCAGGAAAACAAAGGATACAAAGGGGACCCGTGCATTTAAATTTGCGTTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCAATAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGGGCCCCATATTCCTCAGACCCAAGAGAAAATTGACCAGTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAAAATCAGAAGGCTTAG 2853 0.435 MVGGGGVGEEEEEEEEEEGGKGCHEKDEEGGSDRKRKGERDRIKEKGKNPLTDRYLLTYETEAKLRYSLSLSLSAIRHGKIASSTLGFLSPHSVHHSLSTLHYSKRSITALASEMSGSGRNRSSKWDLREEPEFASDNKQSRSGRSSADVAGSNSSKWSYLEGNDKLKPGMGFSFKEPFPGGRGSNKDDTTDKDYRVLDATMDWDGDGSYGKKMSPWSDEWKHKRHSQSPKSGWSRSVRRSRSRSPPQGFRWDSGANDRNRMRAGGSTQPCRDFAAGKCRRGSLCHFLHHDNQKHEDSWESRHREDGAPRYSAPHESRDHSLKSGRSNEACINFAKGRCRMGASCNYVHHNADGYGKVSMDDLTREREIDRRHRDSSFELGGGHGPNRSSDIPCKFFANGNCRNGKYCRFSHDRQASRSPNRRLRDDRWASNPGGDHQMMDRPKLSDSVSPNRRLRDDKWGSDGNMADADKVWDSPKGNDTVAVSDTAKLVEDKTGNVGATEPGFTAWPTRDGWGHSLDKSRVHGEPPFSSDKKEGDHWIAENTGPNMHGSQSIDTDIWPGDAKMSPDWDYRVGSSSHIEEHGQNKHGITQGGTYLATSEHDRIPVTPGQGFNLNVNVNSLHPSSRHAVAQSQVAVPILPSRGGIADGMQNQDVFTDKKYPVEPNIMDAGLPQVSSRNPPTQNVVSKEQLVQLTNISASLAHILGSGQQLPQLYAALNSQDAKDAPSLAKTEVPAMPVSNTFKPDPSVGLPKPYDPMGDIEPKNADASRVPPAIPLSKKPAEDEVEIPSQLSNKAACSEALVKNDHLVQLQSGQNTEVNKDNNEVVSEERKNSQDDHKNKKENGPLENMDPDGGPDEARKTKDTKGTRAFKFALVEFVKELLKPTWKEGQINKEDYKTIVKKVVDKVTGTMQGPHIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQNQKA* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01017 950 ProSiteProfiles Zinc finger C3H1-type profile. 388 415 IPR000571 GO:0046872
Rops10g01017 950 Gene3D - 383 441 - -
Rops10g01017 950 Gene3D - 261 364 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 123 138 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 372 393 - -
Rops10g01017 950 SMART c3hfinal6 388 414 IPR000571 GO:0046872
Rops10g01017 950 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Rops10g01017 950 SMART c3hfinal6 326 351 IPR000571 GO:0046872
Rops10g01017 950 ProSiteProfiles Zinc finger C3H1-type profile. 325 352 IPR000571 GO:0046872
Rops10g01017 950 Pfam CCCH-type zinc finger 393 413 IPR041367 -
Rops10g01017 950 MobiDBLite consensus disorder prediction 440 465 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 412 479 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 139 161 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 114 192 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 19 51 - -
Rops10g01017 950 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
Rops10g01017 950 MobiDBLite consensus disorder prediction 1 51 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 811 865 - -
Rops10g01017 950 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 115 946 - -
Rops10g01017 950 SUPERFAMILY CCCH zinc finger 391 413 IPR036855 GO:0046872
Rops10g01017 950 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 290 IPR000571 GO:0046872
Rops10g01017 950 MobiDBLite consensus disorder prediction 295 323 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 822 865 - -
Rops10g01017 950 Pfam RNA-binding, Nab2-type zinc finger 330 349 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 756 787 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 208 269 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 231 250 - -
Rops10g01017 950 MobiDBLite consensus disorder prediction 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01017 Rops-Chr10 21738464 21762287 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops10g01017 zf-CCCH 5.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01017 - K22909 gmx:100783856 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01017 10 21738464 21762287 Rops10g01017 10 21738464 21762287 ECH