Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01016 ATGGATACCAACCAGAATACTACTACTACCACCACATTCACAAATGTTAACAACAGCACTTGGAATGTTGAGAAGATGGAAACAGATGAACATAACATGATTCTCCATGATCATCAAGTTCCTATGGGTTCTGGAATTTGGCCTAATTACCACCATCCTCTTCAGATTCCCTCCTCAACTTCCTCTTCTTCTTATTCTTCAGGTTTCCTTAGTGACATACTAGGCATCCAGTTAGAAGAAGAGGAAGAGGGTGAAGAGGAGTTAGGAGCCATGAAGGAGATGATGTACAAGATTGCTGCTATGCAACCTGTGGATATAGACCCTGCTACCATAAGAAAGCCAAAGAGGAGAAACGTGCGCATAAGTGATGACCCCCAAAGTGTGGCTGCACGCCATAGAAGAGAGAGGATCAGTGAGAAAATTCGCATCCTTCAAAGACTTGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTTGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAACCAACAACACCATATTCTCAACAACACACTCCACAACCACCAAATTGCATTGCTACTACTACTCCTGCTACCACCTTATTGTTTGCCAATGGTGGTTATTGGCCTTTTGCACCAAATATTCTGCACGGTTCCAACACCACCAATTCCTCCTCCTCCATGGACATGCAAGCAGGACTAGAATTCAACATCAACACCAGAGGCCATGCCGGTGATGGATCCTCAAGCTTTAACAACCATGAGGTAATTAGTGAATAA 789 0.4385 MDTNQNTTTTTTFTNVNNSTWNVEKMETDEHNMILHDHQVPMGSGIWPNYHHPLQIPSSTSSSSYSSGFLSDILGIQLEEEEEGEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQPTTPYSQQHTPQPPNCIATTTPATTLLFANGGYWPFAPNILHGSNTTNSSSSMDMQAGLEFNINTRGHAGDGSSSFNNHEVISE* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01016 262 FunFam BHLH transcription factor 124 188 - -
Rops10g01016 262 CDD bHLH_AtIND_like 122 184 - -
Rops10g01016 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Rops10g01016 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 186 IPR036638 GO:0046983
Rops10g01016 262 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 14 222 IPR045843 GO:0003700|GO:0006355
Rops10g01016 262 SMART finulus 127 176 IPR011598 GO:0046983
Rops10g01016 262 Pfam Helix-loop-helix DNA-binding domain 131 170 IPR011598 GO:0046983
Rops10g01016 262 Gene3D - 124 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01016 Rops-Chr10 21717006 21717794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01016 88 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 74.615 1.45e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g01016 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01016 - - gmx:100775296 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01016 10 21717006 21717794 Rops10g01016 10 21717006 21717794 ECH
Rops2g00796 2 11396254 11397030 Rops10g01016 10 21717006 21717794 PCT