Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01014 ATGGTTTCAACCACTGCTGGAAAGGTCATATGCTGCAAAGCTGCGGTGGCATGGGAAGCTGGAAAGCCACTGGTGATAGAGGAAGTGGAGGTAGCTCCACCACAGGCAAATGAGGTTCGCCTTAAGATCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTTTGGGAAGCTAAGGGACAGACACCCTTATTTCCACGTATATTTGGTCATGAAGCAGGAGGAATTGTGGAAAGTGTTGGTGAGGGTGTGACGGATCTCAAGCCAGGTGATCATGTGCTTCCAGTCTTCACAGGAGAGTGCAAGGAATGTCAGAACTGCAAATCAGAGGAAAGTAACATGTGTGACCTTCTGAGGATTAATACTGACCGTGGAGTTATGCTGAATGATGGCAAGTCAAGGTTTTCAATTAATGGACAGCCAATATACCACTTTGTTGGAACCTCCACCTTCAGTGAATACACTGTAGTTCATGTTGGCTGTGTAGCCAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTATTCTGAGTTGTGGAATCTCAACAGGTCTTGGTGCTACATTGAATGTTGCAAAACCAAGAAAAGGTTCATCAGTAGCTATATTTGGATTGGGAGCTGTAGGACTTGCTGCTGCTGAGGGAGCTAGACTTGCTGGTGCTTCCAGGATTATTGGGGTAGACTTGAATTCTAAGAGGTATACTGAAGCTAAGAAGTTTGGAGTTACTGAGTTTGTGAATCCAAAAGATTCTGACAAACCAGTTCAAGAGGTGATTGCTGCAATGACTGGTGGGGGAGTTGACCGAAGTGTTGAGTGTACTGGAAGTATCAGTGCTATGATCTCTGCATTTGAATGCGTGCATGATGGGTGGGGTGTTGCTGTACTTGTTGGGGTGCCAAACAAAGATGATGCTTTCAAAACACATCCGATTAATCTCTTGAACGAAAAGACTCTCAAGGGTACTTTCTTTGGTAACTATAAACCACGTTCTGACCTCCCATCTGTAGTGGAGATGTACATGAACAAGGAACTTGAACTGGAGAAATTTATCACCCATGAAGTACCTTTCTCAGAAATCAACAAAGCCTTTGAGTACATGCTTACAGGGGAGAGCCTGCGTTGTATAATCCGCATGACTGAATAG 1146 0.4476 MVSTTAGKVICCKAAVAWEAGKPLVIEEVEVAPPQANEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECQNCKSEESNMCDLLRINTDRGVMLNDGKSRFSINGQPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCILSCGISTGLGATLNVAKPRKGSSVAIFGLGAVGLAAAEGARLAGASRIIGVDLNSKRYTEAKKFGVTEFVNPKDSDKPVQEVIAAMTGGGVDRSVECTGSISAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPINLLNEKTLKGTFFGNYKPRSDLPSVVEMYMNKELELEKFITHEVPFSEINKAFEYMLTGESLRCIIRMTE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01014 381 Gene3D - 184 322 - -
Rops10g01014 381 FunFam alcohol dehydrogenase 1-like isoform X1 20 183 - -
Rops10g01014 381 Pfam Zinc-binding dehydrogenase 207 337 IPR013149 -
Rops10g01014 381 Pfam Alcohol dehydrogenase GroES-like domain 37 162 IPR013154 -
Rops10g01014 381 CDD alcohol_DH_plants 10 378 - -
Rops10g01014 381 FunFam Alcohol dehydrogenase class-P 184 322 - -
Rops10g01014 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 343 IPR036291 -
Rops10g01014 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Rops10g01014 381 PANTHER ALCOHOL DEHYDROGENASE 7 377 - -
Rops10g01014 381 SUPERFAMILY GroES-like 329 378 IPR011032 -
Rops10g01014 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Rops10g01014 381 Gene3D - 20 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01014 Rops-Chr10 21702351 21705292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01014 37 365 Monolignol Biosynthesis Gene Families AT1G72680 26.347 1.08e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01014 K18857 - gmx:100783318 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01014 10 21702351 21705292 Rops10g01014 10 21702351 21705292 ECH