Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01009 ATGGAGAATGGGAAAGGTGTTGTTAGCAATGCAAGGTCTCAAAGTAAAGTGAGACTTGCCATTTTGGAACTAGCCCACATGATGAGTGCCCCCATGTCCCTCGTTGCCGTTATCAACCTCAACGTCCCCGAAACCATCTGGCAAAATGGTTCCAACACTCCCCTTTCCGCCGCCCAGATTCTCTCCAGCGTCCGTCCCCACGGCGGCGCCGACGCCGAGAACCTCCAACGCATCCTCCGCTTGCTCACCACTTATGACATCTTCATCGAGCACTTGAACAGCAGTGGTGAAAGGACATACTCCCTCACCGACGTCGGCAAAACCCTCGTCCCCGATGACGAAGGTTTATCCTATGCGTACTACGTGCTCCAGCATCATCAGGATGCGTTGATGCGAGCTTGGCCGTTGGTGGGGGAGGCAGTGGAGGATCCTAAAACGGAGCCATTCAAGAAGGCGAACGGAGAGTCAGCAATAGAATACTACACGAAGAGGCCTGATGTGATGACTTTGATTTATAAGTCATTGGCTGGGATGTCAGGACCCTTCACGAGGGAAATGCTGGAGCGCTACGATGGATTCAAAGGGGTGGAGACACTGGTTGACGTTGGTGGCAATGCAGGTGTCAGTCTTCGCATGATCATGGACAAATTCCCTAACATCCGCAAGGGCATCAACTATGATCTCCCTGAGATGGTGGCCTCTGCACCACACATTCCAGGTGTAACCCATGTTGGTGGTGACGCACTTGAATCTGTTCCCTCTGGGGATGCCATCTTCGTGAAGTGGGTATTTTTAGCATGGACAGACCAGGAATCCAAGAAGGTGTTGCAGAACTGTTACAAGGCGCTTCCGGCGAACGGAAAATTGATTGTTTGCGAGCCTGTGTCTCCGGAGCTGACCGATGAGAGTCAAAGAACAAGAGCATTGCTGGGTGGTGACATATTCATAATGACAATGTATAGAACTAAGGGAAAGCACAGGACTGAAGAACAATTCAAACAACTTGCCATTTCTGCTGGTTTTGCTCGCTTCCATGCCTTCTATATTGATTCTTATATGGCTGTACTCGAGTTTCACAAATGA 1083 0.5032 MENGKGVVSNARSQSKVRLAILELAHMMSAPMSLVAVINLNVPETIWQNGSNTPLSAAQILSSVRPHGGADAENLQRILRLLTTYDIFIEHLNSSGERTYSLTDVGKTLVPDDEGLSYAYYVLQHHQDALMRAWPLVGEAVEDPKTEPFKKANGESAIEYYTKRPDVMTLIYKSLAGMSGPFTREMLERYDGFKGVETLVDVGGNAGVSLRMIMDKFPNIRKGINYDLPEMVASAPHIPGVTHVGGDALESVPSGDAIFVKWVFLAWTDQESKKVLQNCYKALPANGKLIVCEPVSPELTDESQRTRALLGGDIFIMTMYRTKGKHRTEEQFKQLAISAGFARFHAFYIDSYMAVLEFHK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01009 360 Gene3D - 5 114 IPR036388 -
Rops10g01009 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 357 IPR029063 -
Rops10g01009 360 PIRSF O-mtase 2 360 IPR016461 GO:0008168
Rops10g01009 360 PANTHER O-METHYLTRANSFERASE 25 347 IPR016461 GO:0008168
Rops10g01009 360 Pfam O-methyltransferase domain 137 342 IPR001077 GO:0008171
Rops10g01009 360 SUPERFAMILY "Winged helix" DNA-binding domain 16 112 IPR036390 -
Rops10g01009 360 Gene3D Vaccinia Virus protein VP39 115 360 IPR029063 -
Rops10g01009 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 360 IPR016461 GO:0008168
Rops10g01009 360 Pfam Dimerisation domain 32 83 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01009 Rops-Chr10 21639390 21644135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01009 1 360 Monolignol Biosynthesis Gene Families AT3G53140 60.714 1.77e-163 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01009 - - ccaj:109819366 536.184