Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01007 ATGGCCGAAACAAAATTGATTCCAGGGTTTCGGTTTCACCCCACTGACGTTGAGCTGGTTAAGTACTTTCTGAAGAGGAAGTTGCTGGGTAAAAAATTCCCTTTTGATGTCATTGCTGAACTTGACATATACAAGTATGCACCGTGGGATCTACCAGATAAATCTTTTCTCAAAAGTGGGGATTTGAAGTGGTACTTCTTTTGTCCTCGAGGAAAGAAATATTCCTCTGGAGGGAGGATGAATCGGGCAACTGAAATTGGGTACTGGAAGACTACTGGGAAGGATAGACCAATTGAACACAAAAATCAAGTCGTGGGGATGATAAGAACCCTGATATTTCACACTGGGAGAGCGCCTAAGGGAGATCGAACAGATTGGGTTATGCATGAATTTAGACTTGAAGACAAGGAGCTAACTGACAGAGGCATTCCACAGGATTCCTATGTGATTTGTAGGGTATTCCAAAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAGTATGGAAAACCATTTAATGAGGAAGACTGGGATAAAGAAGAGGAAATTGATGGTGCACAATCTGTCCCTGTTGCTGCTATGTCTGAACCAGTTTCCACCCCACCTAGCACAAGTCATATTTCTGTTGCAAATGACATGCATCCTTTTCCAAGTGGATGTATTGGATCAACCTCTGTATCATGTATATCAGGATTGATGCCCTCTTGCTCGACACATCCTTCAGCTCCAAGCAATCAAGTCGATGATGACAAATTATCCATGCTTGATTCTTTCAAAGAAGATGATAACACATTGGCTGTGAATGAAAACAATGGAATCAAGGTTGATAATCCTGATCAGGAGAATAATGCTGAAGGCGCACCTTATTTAGATGCAAATGAGATTTTTGAGGGCTTAGGAGACCTTGACAGCATGGTTCGGTTGGGTGGAGGACACGATATTTCCTGTGGCCAGAAAGATACAAATGGAATGCAATCTAGTGGTGAATTTTTGGACCCCCAAGACTTCTTGGAGTTGATTGACCTAGAGGTGCCGGTGCCATTGTTATGGCAGACGGAACAACATGGAAGTTGGAGCCAAGACAAGTAA 1086 0.4319 MAETKLIPGFRFHPTDVELVKYFLKRKLLGKKFPFDVIAELDIYKYAPWDLPDKSFLKSGDLKWYFFCPRGKKYSSGGRMNRATEIGYWKTTGKDRPIEHKNQVVGMIRTLIFHTGRAPKGDRTDWVMHEFRLEDKELTDRGIPQDSYVICRVFQKEGPGPRNGAQYGKPFNEEDWDKEEEIDGAQSVPVAAMSEPVSTPPSTSHISVANDMHPFPSGCIGSTSVSCISGLMPSCSTHPSAPSNQVDDDKLSMLDSFKEDDNTLAVNENNGIKVDNPDQENNAEGAPYLDANEIFEGLGDLDSMVRLGGGHDISCGQKDTNGMQSSGEFLDPQDFLELIDLEVPVPLLWQTEQHGSWSQDK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01007 361 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Rops10g01007 361 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Rops10g01007 361 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Rops10g01007 361 FunFam Nac domain-containing protein 86 15 159 - -
Rops10g01007 361 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Rops10g01007 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01007 Rops-Chr10 21556591 21561510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01007 1 344 NAC Transcription Factor Family AT5G09330 47.139 6.46e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g01007 NAM 9.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01007 - - adu:107470479 495.738