Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01004 ATGCCCAGTTGGTGGGGTAGAAAATCAAGCAAGAGCAAGGAAGAACAGGAGGCACATGGTGGTGTGCTTCACTTCAATTTCATAAGAAAAAACGTTGCAAAGAAGGGTAAGGGTGAACGGCCTAAGAGTTTCGACGATGCTTCAGCCGCCAGGAACTGTTCACCCAGGGTTAGTAAGGATTTAACTTCCGCCGCCGCCGTGGGTGATGGCGGCGGCTCATCCTCTGGATTCTCTTGTTTTGATTCCGATGGTGGTGCTGAGAAACGAGGACTTCCGTTGCCTCGACCTTCTGTTTCTTCTACACAAAGCTTTGGTAACGATCAAGGGCTTGTGTTTGGATCTGCTTCGACCTCTGATTCTAGCGTCAGCTCCACTGGCTCCTATGATGATCATCAAACCTGTCACTCTCAGATTAATGGCTCCAGAGGACAAGGTGACGTGAAGTTCAATGTGAGGCCTAAAAGCCCTGGTCCTGGGTCAAGAGGGCCCACCAGCCCTACATCACCCCTTCTTCCAAGGTCGCATGTTTTTAGTCTCGACTCCCCTACAGGCAGGCAAGAAGATGGAAGGAGCCAATGTCATCCATTGCCTCTTCCACCAGGCTCTCCTACTAGTCCTTCTTCGCTTTCCAGTACAAGGGCAAATGGACTGCTAGAAAACACTACCGGTAACCTTTCCAAGTGGAAGAGAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTTTACCTGGGATTTAATAGTGATAGTGGACAATTGTGTGCAATAAAAGAAGTCAGGGTGGTCCATGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATAAATTTGCTTAGTCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAACACTTTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCTTCAAGGAGCCTGTTATTCAAAATTACACAAGGCAGATTGTCTCTGGCCTTTCCTATCTTCATGGGAGAAATACAGTGCACAGGGATATCAAAGGGGCTAACATACTTGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCGAAACATATAAATTCTTCTGCCTCAATGCTTTCTTTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGCCTGGGATGCACGATTCTTGAAATGGCAACATCGAAGCCTCCTTGGAGTCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAGAGATATGCCTGAAATTCCCGATCACCTCTCAAGTGATGCAAAGAATTTCATTATGCTCTGCTTACAAAGAGAACCATCAGCTCGCCCGACAGCCCATATGTTACTAGATCATCCCTTTATTCGAGATCAATCAGCAACAAAAGCTACAAATGTCAGAATAACGAGGGATGCTTTCCCCTACATGTTTGATGGAAGCCGGACGCCGTGTCGGGCTGGAGCTAACTTTCTCCTTTCTTGGATCGCTTTGCAGCCAGTTTTAGAGCATCATTCCAGTAGAACAGGTATAACTTCACTGGATGGAGATTATGCAACAAAGCCAGCTGTTACAGCTTCACGAGCAGCAAGGAGCCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCATGTTCAAGTCCATTGCGACAATATGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCTCCTCATCCAACTTACACAATGATGGGACAAAACACCTTCTCATCATATCCAATGAGATCAAATGCCACTTTCACTCTTGATCCTTGGCATGAAACATCTGCATACAAAGTCCACACACCCGGTGGATCCCCTAGAACGAGACTCCTTTGA 1932 0.4545 MPSWWGRKSSKSKEEQEAHGGVLHFNFIRKNVAKKGKGERPKSFDDASAARNCSPRVSKDLTSAAAVGDGGGSSSGFSCFDSDGGAEKRGLPLPRPSVSSTQSFGNDQGLVFGSASTSDSSVSSTGSYDDHQTCHSQINGSRGQGDVKFNVRPKSPGPGSRGPTSPTSPLLPRSHVFSLDSPTGRQEDGRSQCHPLPLPPGSPTSPSSLSSTRANGLLENTTGNLSKWKRGKLLGRGTFGHVYLGFNSDSGQLCAIKEVRVVHDDQTSKECLKQLNQEINLLSQLSHPNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSRDMPEIPDHLSSDAKNFIMLCLQREPSARPTAHMLLDHPFIRDQSATKATNVRITRDAFPYMFDGSRTPCRAGANFLLSWIALQPVLEHHSSRTGITSLDGDYATKPAVTASRAARSPRDNTRMITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTMMGQNTFSSYPMRSNATFTLDPWHETSAYKVHTPGGSPRTRLL* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01004 643 ProSiteProfiles Protein kinase domain profile. 228 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01004 643 MobiDBLite consensus disorder prediction 95 144 - -
Rops10g01004 643 MobiDBLite consensus disorder prediction 1 21 - -
Rops10g01004 643 SUPERFAMILY Protein kinase-like (PK-like) 226 485 IPR011009 -
Rops10g01004 643 ProSitePatterns Protein kinases ATP-binding region signature. 234 257 IPR017441 GO:0005524
Rops10g01004 643 Pfam Protein kinase domain 229 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01004 643 MobiDBLite consensus disorder prediction 33 222 - -
Rops10g01004 643 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 87 492 - -
Rops10g01004 643 CDD STKc_MEKK1_plant 227 484 - -
Rops10g01004 643 MobiDBLite consensus disorder prediction 166 188 - -
Rops10g01004 643 Gene3D Transferase(Phosphotransferase) domain 1 225 503 - -
Rops10g01004 643 FunFam Mitogen-activated protein kinase kinase kinase 226 508 - -
Rops10g01004 643 SMART serkin_6 228 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01004 643 MobiDBLite consensus disorder prediction 205 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01004 Rops-Chr10 21497783 21503435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01004 1 562 MAP Kinase Kinase Kinase AT1G53570 58.144 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops10g01004 Pkinase 5.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01004 K04421 - gmx:100813122 940.643