Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01002 ATGAATCTCACTTCTCTCACACGCTTCCCTGAGTGTCTTGTTGCTCCTCTTTATTCTACAGTTCCCACCAGGAGCAATAGTGTGGAGAATTTTGCAATTGAAGGCCGTAATCTGAATTTCTCATTCACAACAAGGCAAACGAAGGATGTCCCAGTTCTTAAGGATTGTTCACTTCGCATTCCTTCGGGGCAGTTTTGGATGCTTCTTGGACCCAATGGATGTGGAAAATCAACCCTCTTGAAGATTTTGGCGGGTCTTTTAACTCCAACTTCAGGAACAGTGCATGTGAATGAGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTGTTGCCTACAGTAGATGCTGACGTTGCATTTGGTCTTGGTAAGATCAATTTGACCAATGATGAAGTCAGATGTAGGGTGTCACGAGCTTTGCATGCTGTAGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACACTGAGTGGTGGTCAGAAGCAGAGGGTGGCCATTGCTGGTGCTCTAGCAGAAGCTTGTAAAGTTCTGTTGTTGGACGAGCTCACAACATTTTTGGATGACACTGACCAGGTGGGGGTTATCAAAGCTGTTAGGAACACTCTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACCCATCGTTTGGAAGAACTGGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTTGTAAAGCATGGAGATGCAGCAAGCATAAGGAGTTTCATTGAAACCAGGCAATCCGCCTATATTAAACAGATTAATTCTTAA 789 0.4449 MNLTSLTRFPECLVAPLYSTVPTRSNSVENFAIEGRNLNFSFTTRQTKDVPVLKDCSLRIPSGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVHVNEPKSFVFQNPDHQVVLPTVDADVAFGLGKINLTNDEVRCRVSRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDDTDQVGVIKAVRNTLDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVKHGDAASIRSFIETRQSAYIKQINS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01002 262 SMART AAA_5 62 235 IPR003593 GO:0016887
Rops10g01002 262 ProSitePatterns ABC transporters family signature. 158 172 IPR017871 GO:0005524|GO:0016887
Rops10g01002 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 252 IPR027417 -
Rops10g01002 262 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 33 249 - -
Rops10g01002 262 Pfam ABC transporter 53 185 IPR003439 GO:0005524
Rops10g01002 262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 258 IPR003439 GO:0005524
Rops10g01002 262 CDD ABC_cobalt_CbiO_domain1 34 235 IPR015856 GO:0005524|GO:0016020|GO:0055085
Rops10g01002 262 FunFam ABC transporter I family member 10 29 259 - -
Rops10g01002 262 Gene3D - 28 261 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01002 Rops-Chr10 21491150 21493735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01002 33 240 Calmodulin-binding Proteins AT2G36910 29.646 4.77e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01002 - - gmx:100813654 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01002 10 21491150 21493735 Rops10g01002 10 21491150 21493735 ECH