Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00996 ATGCCACAGTTTCCCTGTTTCCTCAACTCACAGGTGGATTCAAACTTCAAAGACATTAACAATAATTTTCCCTTTTGGTGGGCCAGTTTGACTGGATTGATATGGGGTAAGGAAGAACTGCAGGTTTGCATAAAACTTCTTATGCTCCTCCACTCCTCTTTTATAAGTCCAATTTGGAATTTTCATTCCATGAACGAAGGCCAAATTGAAATTACGGTTCCTCACTTGTTCAGATGCCCCATCAGTTTAGACCTGTTCGAAGATCCTGTAACTTTATGCACTGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTGGCTGCAGGTAATTTCACATGCCCTGTAACAATGCAGAAGCTTCATGATCTATCCATTGTTCCCAATCACACTCTTCGCCATTTGATTGATCAGTGGCTTCAATTGGGTGCCCAATTTGACCATGGTAACTCTGCTACAATAGATTATTTAGCTGCAATAAAGCACAGCCTCGAATCTCCTGAGGCCACCTTAGAAAGCAAGCTCCAAGCACTTGAGAAAATTAGTGTTTTGTCTAATGAGTATTGTTCTTTCAGAAAATCTTGTTTCCAACAATTGAGTTTCTTGCCTCTACTTTTAGAACTAGTTTTTGGAAAACCAGATGCTCAACTCTCAAAAAATCACATGGAATTTGTGGAGTTAGCACTTTCTTGCATAATAAAATTGTTGCCTCTTGTCAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCCAAGTTAGCAACATTCATACTATTATTTGAAAAGGGAACTAGCTCAATTAAGACTAGTTTGTGTCATCTTATTGATTCAACAACAACATCACAGACAGAAGAGGTATGTCACATGCTAGGAAACTCTCACAAACTACTACATGAGATTGTTCTGGTTGTTGACCAAAATTGTGAGGTTTCCAAGGCTGCAATCAAAGCCATGTCAGCATTATGCTCCTTGCAATCTAACAGAGAGAGTTTAGTGAGAGCAGGAGCAATAGGTGGGATCATAACATACATTTCAGGTTGTGAAACAAGACAGAAGAACTTGGCTCCACTTGCAATGACCATAATGAAGAAGCTTTTGGTGCTAGAGAGTGCTAAAGAGGCATTGGTGAATCACCCTCATGGTATTGAAACTTTGGTGAAGATGGTTTTCAGGGTATGCAATCAAGAGTGCAGTGAAAGTGCTGTTGGAATACTTTCAATTATTTGTCGTGATTTTGGGCGTGCAAGAGAGGAAGCAATTGGGGCTGGAATTTTGACTCAGTTGCTGTTTCTTCTACAGAGTCAGAGTGGCACCAAAACAAAAACAAAGGCAAGAATGTTGCTCAAGTTGCTGAGATCCAAGTGGATTGAAGAACCAAAGCAAGTGTAG 1389 0.4003 MPQFPCFLNSQVDSNFKDINNNFPFWWASLTGLIWGKEELQVCIKLLMLLHSSFISPIWNFHSMNEGQIEITVPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLAAGNFTCPVTMQKLHDLSIVPNHTLRHLIDQWLQLGAQFDHGNSATIDYLAAIKHSLESPEATLESKLQALEKISVLSNEYCSFRKSCFQQLSFLPLLLELVFGKPDAQLSKNHMEFVELALSCIIKLLPLVSLEPLNMIKDESKLATFILLFEKGTSSIKTSLCHLIDSTTTSQTEEVCHMLGNSHKLLHEIVLVVDQNCEVSKAAIKAMSALCSLQSNRESLVRAGAIGGIITYISGCETRQKNLAPLAMTIMKKLLVLESAKEALVNHPHGIETLVKMVFRVCNQECSESAVGILSIICRDFGRAREEAIGAGILTQLLFLLQSQSGTKTKTKARMLLKLLRSKWIEEPKQV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00996 462 CDD RING-Ubox_PUB 74 121 IPR045210 -
Rops10g00996 462 FunFam RING-type E3 ubiquitin transferase 73 144 - -
Rops10g00996 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 149 IPR013083 -
Rops10g00996 462 PANTHER WDSAM1 PROTEIN 70 459 IPR045185 GO:0061630
Rops10g00996 462 Pfam U-box domain 73 141 IPR003613 GO:0004842|GO:0016567
Rops10g00996 462 SUPERFAMILY ARM repeat 161 451 IPR016024 -
Rops10g00996 462 SUPERFAMILY RING/U-box 65 141 - -
Rops10g00996 462 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Rops10g00996 462 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Rops10g00996 462 Gene3D - 269 460 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00996 Rops-Chr10 21395059 21396994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00996 71 458 U-box Gene Family AT1G49780 30.370 5.70e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00996 - - gmx:100819468 639.802