Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00993 ATGGCAGATGGAAGCATCAACCTTCCTCCTGGGTTTCTCTTCTCTCCAACTGATGAAGAACTTGTCCTTCACTTTCTCTATTGTAAAGCTTCTCTTCTACCTTGCCATCCAAACATCATCCCTGATCTTGATCAAACCCTGCTTCATCCTTGGGAATTAAATGGTAAGGCATTGTCAAGTGGAAAACAATACTATTTCTTCACCAAAGTGAAGGAAAACAGAAGCACAGAAAATGGGTATTGGAAGGAAATAAGTGTCACAGAACCTGTATTCTCAGCTGTTGACAAGAAAGTGGGAATCAAGAAGTACCTTGTATTCCACATTGGTGAACATCCACAAGGTACTGAAACAAATTGGGTGATGCAAGAATATCACATTTGCTCCTCTGTGTTTGACACTGGATCATATCGAAGTGTTAGGGGAAAACGAAAATTTGACCAAAATTGGAGCAAGTGGGTTTTATGCAGAGTGTATGAAAAGAACATAAGTTCTCAACAAGGTGTACACTACTATAGTGATGAGGATGACAGTGGAACAGAAATTTCATGGCTAGACGAAGTTTATCTATCGTTGGATGATGATATGGAAGAAATAAGTATGCCTAATTAG 609 0.3924 MADGSINLPPGFLFSPTDEELVLHFLYCKASLLPCHPNIIPDLDQTLLHPWELNGKALSSGKQYYFFTKVKENRSTENGYWKEISVTEPVFSAVDKKVGIKKYLVFHIGEHPQGTETNWVMQEYHICSSVFDTGSYRSVRGKRKFDQNWSKWVLCRVYEKNISSQQGVHYYSDEDDSGTEISWLDEVYLSLDDDMEEISMPN* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00993 202 PANTHER NAC TRANSCRIPTION FACTOR 56 8 172 - -
Rops10g00993 202 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Rops10g00993 202 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Rops10g00993 202 Pfam No apical meristem (NAM) protein 9 126 IPR003441 GO:0003677|GO:0006355
Rops10g00993 202 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00993 Rops-Chr10 21350368 21351588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00993 1 165 NAC Transcription Factor Family AT1G61110 39.665 7.91e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g00993 NAM 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00993 - - gmx:100170711 342.813