Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00988 ATGGAAGATGAGAACCATAACAATTTGCCAAATGGGCTCATCACAGGAAGCCCTGAAAGCCCTTGCATAAAGACATCCAACAGCAACAACAACAATGACTATAACCACAATAGCAACAAAGAACAAGATCGCTTTCTCCCAATAGCCAATGTGGGTAGAATCATGAAAAAAGCCATCCCTGCTAATGGGAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGCTTTGTCACTGGGGAAGCCTCTGATAAATGCCAAAATGAAAAAAGGAAGACCATCAATGGTGATGATGTCATATGGGCTATTACAACATTAGGATTTGAAGATTATGTGGACCCATTAAAATCCTATCTCCAGAAATATAGAGAGATAGAAGGAGAGAAGCTTAATACTCCAAAGCAACAACGTTCTGAACAAAGGCTACAGCAACATCACAACCAAGATCAAAATAATGTACCTTTAAATAGTGTATATTCCTCAACAAGTCTCATTTCTCAACCTCCATTTGTGGCCACGGATCAGCTATTTTCCTTACCGTTCTCTCCAAATTCAATTCAGAAACAGTTACAGGCGCAAGATCAGATCGATTCAGTGGGGCAATGGTAA 627 0.3955 MEDENHNNLPNGLITGSPESPCIKTSNSNNNNDYNHNSNKEQDRFLPIANVGRIMKKAIPANGKISKDAKETVQECVSEFISFVTGEASDKCQNEKRKTINGDDVIWAITTLGFEDYVDPLKSYLQKYREIEGEKLNTPKQQRSEQRLQQHHNQDQNNVPLNSVYSSTSLISQPPFVATDQLFSLPFSPNSIQKQLQAQDQIDSVGQW* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00988 208 Gene3D Histone, subunit A 32 162 IPR009072 GO:0046982
Rops10g00988 208 FunFam Nuclear transcription factor Y subunit B-3 34 158 - -
Rops10g00988 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops10g00988 208 ProSitePatterns NF-YB/HAP3 subunit signature. 76 92 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops10g00988 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Rops10g00988 208 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Rops10g00988 208 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Rops10g00988 208 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Rops10g00988 208 MobiDBLite consensus disorder prediction 135 150 - -
Rops10g00988 208 MobiDBLite consensus disorder prediction 8 40 - -
Rops10g00988 208 MobiDBLite consensus disorder prediction 135 161 - -
Rops10g00988 208 SUPERFAMILY Histone-fold 42 159 IPR009072 GO:0046982
Rops10g00988 208 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00988 Rops-Chr10 21237344 21237970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00988 12 208 CCAAT-HAP3 Transcription Factor Family AT2G13570 61.682 4.20e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops10g00988 CBFD_NFYB_HMF 3.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00988 K08065 - gmx:100778216 327.405