Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00981 ATGAAGTTGATCGGCGACGGTGATGGCCGGAAAGTGTTGGTTGGAGTTAAATTAGATCCTCGGAGCCGGGAATTGCTGACGTGGGCTCTCGTTAAGGTGGCGGAGCCCGGTGACCTCGTCATTGCGCTTCACGTCCTCGACACAATCACCGAGGGAACAGCATCGTTGCTATCTCTGGTGAAGACTTTCGATTCTGTTCTCGCCGTATACGAAGGTTTCTGCAATTTAAAGCAGGTTGATCTCAGGCTTAAAGTATGTCGAGGTGGTTCGGCTCGGAAGCTTTTAGTACAAGAAGCGAAATCGTTAGACGTTGCGACGGTTATTCTCGGAACTTCTAAATCTCATCACGCAATTCGTTCCTCCACGTGGGTTGCCAAATACTGTGCTAAGAAATTGCCTAAATGTGTCTCTGTCTTCGCTGTTGATAATGGCAAAGTTGCATTTCACAGAGAAGCTTCTAGAATACTTAATGATAAAGAAAAATTACATGAAGGGTTGAATTTATCACCAACAATGTTGGTTGGTTATACAGATAAGAATACGAAGAATTGTGAAAGTTGTGCATTGCGAGAGACTTGTGAAACTGAATTTAAGCAAGGGTTGGTTGATGATATTGAAAAGGAAAATTCACTTGCTTTGGTACCGTTTCAAAAACTTGATGATGCTCCTTGTTATTCAGTTGTGATGGGTAATTCAAAACAGTCAATACCTGGTTGGTCACTTCTTCGCCAGGTTTTTCAGCCCAAAAAGCATTCTAAATCTTCAGTGAAAAATACATTTGTTTTTCAACGGGCAATACGACAGCCCAATTGTCATTCTTCAGCTGTGGTCCATCCAGATCATAAACAAATTAGTATTGACCAGAATGAGAATTCAGCCCTTGATGGGGAGAGTGGTGCCATTGTACCATTTGGATCTGCTACTATCTTTCCTCTTCCCTCCCTTTGTGGTGACTTGAGTAGCCTTCCTGAAGAATTGTTGGTCTTGAAAGAGAAGTACTCATCTTCATGCAGATTATATAGTTTGCAGGAACTTGTATCTGCAACCGTCAACTTCTCGTCTGAAAAATTGGTTGGCAAAGGTGGTAGCAGTTATGTTTACAGAGGGTGTCTTCCAGATGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCATCAGAAAATGTGATAAAAGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGCATCACAAGAACATATTATCTCTACCTGGATTTTGTTTGGAGGGCAACCATTTACTACTGGTTTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGCAATAAGAAGGACTGTAATGCATTTGGTTGGCAAGAGAGGTACCAGGTGGCTGTGGGTGTAGCTGAGGCATTGGACTATCTGCATAATGGCTGTGCACAGGCTGTGATCCATAAGGATGTGAAATCTTCGAATATCCTTCTTTCAGATGATTTTGAGGCTAAGCTCTCAGATTTTGGACTGGCTAGTTGGGGTTCTTCTTCTTCCCACATTATTTGTACTGATGTGGCTGGAACTTTTGGATACCTAGCTCCTGAATACTTTATGCACGGTAGAGTGACCGACAAAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTAACAAACAGGAAGCCCATTAACAATGAATGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACCAATTTTGAAAGATGGGAAGCTTTCCCAGTTGCTTGATCCAAGCCTAGGCAGTGAATACGACCATTGCCAGATCAAGAGAATGGTTTTGGCTGCTACTCTCTGCATTAGACGAGAACCTAGATTGCGACCTCAAATCAGCCTTATATTGAAACTTCTGCGTGGTGATGAAGAAGTGACAAGATGGGCAGAACAAGACGTTAGTGCACCACAGGAACTAGATGGATTTGATGAGGAACCAGCTCTAACTAATATTCAGTCCCACCTGAACCTTGCTTTGCTGGACCTGGAGGATGATGCAGTTTCCATCAATAGCACTGAGCAGAGTGTCTCAATGGAGGACTATTTGCGGGGAAGATGGAGTCGCTCTTCAAGTTTTGACTAA 2091 0.4275 MKLIGDGDGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTASLLSLVKTFDSVLAVYEGFCNLKQVDLRLKVCRGGSARKLLVQEAKSLDVATVILGTSKSHHAIRSSTWVAKYCAKKLPKCVSVFAVDNGKVAFHREASRILNDKEKLHEGLNLSPTMLVGYTDKNTKNCESCALRETCETEFKQGLVDDIEKENSLALVPFQKLDDAPCYSVVMGNSKQSIPGWSLLRQVFQPKKHSKSSVKNTFVFQRAIRQPNCHSSAVVHPDHKQISIDQNENSALDGESGAIVPFGSATIFPLPSLCGDLSSLPEELLVLKEKYSSSCRLYSLQELVSATVNFSSEKLVGKGGSSYVYRGCLPDGKELAVKILKPSENVIKEFVQEIEIITTLHHKNILSLPGFCLEGNHLLLVYDFLSRGSLEENLHGNKKDCNAFGWQERYQVAVGVAEALDYLHNGCAQAVIHKDVKSSNILLSDDFEAKLSDFGLASWGSSSSHIICTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLTNRKPINNECPKGQESLVMWATPILKDGKLSQLLDPSLGSEYDHCQIKRMVLAATLCIRREPRLRPQISLILKLLRGDEEVTRWAEQDVSAPQELDGFDEEPALTNIQSHLNLALLDLEDDAVSINSTEQSVSMEDYLRGRWSRSSSFD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00981 696 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 321 426 - -
Rops10g00981 696 SUPERFAMILY Protein kinase-like (PK-like) 333 622 IPR011009 -
Rops10g00981 696 ProSiteProfiles Protein kinase domain profile. 352 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00981 696 CDD USP_Like 11 136 - -
Rops10g00981 696 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Rops10g00981 696 Gene3D Phosphorylase Kinase; domain 1 322 426 - -
Rops10g00981 696 SMART serkin_6 352 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00981 696 FunFam Putative receptor-like serine/threonine-protein kinase 427 638 - -
Rops10g00981 696 PANTHER OS08G0249100 PROTEIN 62 634 IPR046958 -
Rops10g00981 696 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 9 142 - -
Rops10g00981 696 Pfam Universal stress protein family 10 136 IPR006016 -
Rops10g00981 696 Gene3D Transferase(Phosphotransferase) domain 1 427 639 - -
Rops10g00981 696 Pfam Protein kinase domain 353 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00981 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Rops10g00981 696 Gene3D HUPs 9 142 IPR014729 -
Rops10g00981 696 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00981 Rops-Chr10 21128356 21131814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00981 339 623 Trihelix Transcription Factor Family AT1G68690 44.257 1.75e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops10g00981 Pkinase 6.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00981 - - gmx:100815722 1150.19