Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00972 ATGATTGGGATTGCTTTCACAGGCTCTGGAAAAACTTTGGTCTTTGTGCTGCCCATGATCATGGTGGCAATGCAGGAGGAAATTATGATGCCTATAGTTCCTGGAGAAGGACCATTTGGTTTGATTATTTGTCCATCAACGGAACTGGCTAGGCAAACTTATGATGTGGTTGAACAATTCCTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTGAGGCCTCTGCTTTGTATTGGTGGAGTGGACATGAGATCGCAGCTTGAGATTGTGAAGAAGGGAGTTCATATTGTTGTTGCCACTCCTAGGAGGTTGAAGGATATGTTGGCCAAGAAGAACATGAATCTTGATTACTGTAGGTGTGGAAGCAAAGTGGTCATTCATGGAGGCAAGGATCAGGAACAGAGAGAGTATGCCATTGCAGCTTTTAAAGCTGGAAACAAAGATGTGTTGGTTGCAACCGATGTTGCATCCAAAGGATTGACTGATGGAAGATGTGGCAAGACCGGTATTGCGACAATATTTATAAACAAGAATCAAAGTGAGACAACATTACTTGATTTGAAACACCTCTTGCAAGAAGCAAAACAAAGGATTCCCCAGCTTTTGGCCGAGCCGAATGATCCAATGGAAGATAATGAGGAAATTACGGATAAAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGATTGTCCCAAATTAGATCATCAAGAGCATGGCAATAGCAAATAA 750 0.432 MIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSTELARQTYDVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPRRLKDMLAKKNMNLDYCRCGSKVVIHGGKDQEQREYAIAAFKAGNKDVLVATDVASKGLTDGRCGKTGIATIFINKNQSETTLLDLKHLLQEAKQRIPQLLAEPNDPMEDNEEITDKSGVKGCAYCGGLGHRIRDCPKLDHQEHGNSK* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00972 249 Coils Coil 177 204 - -
Rops10g00972 249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 119 IPR027417 -
Rops10g00972 249 SMART c2hcfinal6 223 239 IPR001878 GO:0003676|GO:0008270
Rops10g00972 249 Gene3D - 207 249 - -
Rops10g00972 249 Pfam Zinc knuckle 223 239 IPR001878 GO:0003676|GO:0008270
Rops10g00972 249 Gene3D - 1 126 IPR027417 -
Rops10g00972 249 ProSiteProfiles Zinc finger CCHC-type profile. 224 239 IPR001878 GO:0003676|GO:0008270
Rops10g00972 249 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 118 IPR014001 -
Rops10g00972 249 SUPERFAMILY Retrovirus zinc finger-like domains 223 243 IPR036875 GO:0003676|GO:0008270
Rops10g00972 249 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 120 - -
Rops10g00972 249 Pfam DEAD/DEAH box helicase 2 120 IPR011545 GO:0003676|GO:0005524
Rops10g00972 249 SMART ultradead3 1 190 IPR014001 -
Rops10g00972 249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 206 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00972 Rops-Chr10 20992155 20993323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00972 1 132 Eukaryotic Initiation Factors Gene Family AT1G72730 26.277 1.37e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00972 K13116 - ptep:107439579 262.307