Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00970 ATGTCGTCCATGGCTGCTCGGATTGATCCTTTGGAGAAAATCACGCCGGCCAGTGAATGTTGGAGAGTAAAAGTCCGTATTATTCGTCTTTGGTACTTCCCGAGTTTCAACGATAAGGATGCCATCAACAGCATTGAGTTCGTTTTCATGGATGAGGCAGGTTCTACTATGCATGCTACTGTCCGTAAAACTTTGGTTTACAAGTTTAAAACACAGTTGAAAGAAGGGAATGTTTATATCATCTCCTATTTCAGTGTTTGTGGGAATGGTGGCTTCTTTCGCACATCAAAGCACGAGTTCCGGTTAAATTTTCAATTGAGAACAATCGTTAGACCTTCTGCGAGTGATAAAATACCCATGTTTGGATGCAATTTAATTCCATTTCATGAAGTTCTTCAATGTCCTGCTGATTACCCTTATCTCATTGATGTCATGGGACTTCTCACAGTTGTCGGGACTCAAAGGGAATATGTCAAGGATGGGAAGAGAACTAAGATGATTGTGATTGAACTTGATGCTGATAGTGTGAGATTGGAGGTCACTTTGTTTGGGGATTATGTGGATCAAGTCAATGCTTTTCTTGCTAATGGTAAAACAGTGTTGCAAAATGTCATGTTTGGTACAAGGTTGTTGTTCAATCCTGAAATGGAAGAAGTTGTTGAATTCAGAAACAGGCTGCCTGTGTCTCTTTCTGAGGGCTCCCAAGGTTTAAATTTAATTTCTGGTGGAAATAATTATTCTTTGGAAGAAGATTTCTTGAATTCAACTGTCAGGAAAACCATAGAGGAGTTGAAGGATTGCAAAGATTCTGGCTTCTTTATTGTAAATGCTTATGTCAAGGGGATTGCCAATGGGCAAGACTGGTGGTACACGGCATGCAAGTGTAATAAAGCGGTACATCCAGATTCTGGAATGTACTATTGCGAGAGGTGTTATTGTCATGTTGTTAATGTGATTCCCAGATATCGAATAAAGCTAAGAGTGATCGATGTCTCTGATAGCACAACTTTTGTCATCTGGGATCGTGATGGCTGTACTCTACTTCAAAAGTCTTGCTTTGAACTTTTAGATAGTATGAAAAATAGGGAAAATTCTGATGGTCTTCCAATTGAGTTTGAGAACCTTCTCTTCAACAAAGAGTTCTTATTCAAAGTTGAAGTCAAGTCAGCTGTTAGTCCAAATTTTGAACCTTCATTTAGGGTTGTGAGAGTCTGTACAGATGAGGAAATTATAACAAAGTTTATAAAGTCTGCTGGTCAAGTTGAGCATAATGAGCCTGATATGACCACTGGTGTTTCTCTCGGGGATTCTTCATTCAATCTTGGAATGCAAGATACTCTTGCATCTGCTTCTAAGCTTGATATGTCCACAGGAGTTTCAATTGGGGATTCAACATTCAGTCTTGGAATGCAAGATGTACTTTCCTCTACTTCTAAGGAATGTTCAGAAATGGAAAATTTGCTAAGTTCTCAGGCTGATAACTTGGAACCTATTTTGACTCCAATTAAAAGGTCTTTTGAAGATGGTGTTTTGGGTGACGGAGACTTCTCTATCACAAAGCTGAAGGAAATTAAGAAGGAGTCAGAGGATTGA 1593 0.3917 MSSMAARIDPLEKITPASECWRVKVRIIRLWYFPSFNDKDAINSIEFVFMDEAGSTMHATVRKTLVYKFKTQLKEGNVYIISYFSVCGNGGFFRTSKHEFRLNFQLRTIVRPSASDKIPMFGCNLIPFHEVLQCPADYPYLIDVMGLLTVVGTQREYVKDGKRTKMIVIELDADSVRLEVTLFGDYVDQVNAFLANGKTVLQNVMFGTRLLFNPEMEEVVEFRNRLPVSLSEGSQGLNLISGGNNYSLEEDFLNSTVRKTIEELKDCKDSGFFIVNAYVKGIANGQDWWYTACKCNKAVHPDSGMYYCERCYCHVVNVIPRYRIKLRVIDVSDSTTFVIWDRDGCTLLQKSCFELLDSMKNRENSDGLPIEFENLLFNKEFLFKVEVKSAVSPNFEPSFRVVRVCTDEEIITKFIKSAGQVEHNEPDMTTGVSLGDSSFNLGMQDTLASASKLDMSTGVSIGDSTFSLGMQDVLSSTSKECSEMENLLSSQADNLEPILTPIKRSFEDGVLGDGDFSITKLKEIKKESED* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00970 530 PANTHER OS03G0429900 PROTEIN 11 404 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops10g00970 530 Gene3D - 6 112 IPR012340 -
Rops10g00970 530 CDD RPA1_DBD_C 259 388 IPR047192 -
Rops10g00970 530 SUPERFAMILY Nucleic acid-binding proteins 123 228 IPR012340 -
Rops10g00970 530 Gene3D - 117 229 IPR012340 -
Rops10g00970 530 SUPERFAMILY Nucleic acid-binding proteins 258 393 IPR012340 -
Rops10g00970 530 Pfam Domain of unknown function DUF223 47 133 IPR003871 -
Rops10g00970 530 Gene3D - 246 412 IPR012340 -
Rops10g00970 530 Pfam Replication factor-A C terminal domain 272 390 IPR013955 -
Rops10g00970 530 CDD RPA1_DBD_B_like 143 227 - -
Rops10g00970 530 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
Rops10g00970 530 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00970 Rops-Chr10 20943024 20946337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00970 3 387 Core DNA Replication Machinery Family AT5G08020 24.065 3.29e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00970 - - vun:114165619 348.977