Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00959 ATGCAGGGTGAATTAGAGTTACCACCTGGGTTCAGATTTCACCCAACCGACGAGGAATTGGTGAATCACTACTTGTGTCGGAAATGTTCTGGTCAATCAATTGCTGTTCCTGTCATCAAAGAGATTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTTTTCATAGTGAGAAAGAATGGTACTTTTTCTCTCCACGGGATCGGAAATACCCCAACGGTTCACGGCCAAACCGGGCTGCCGGAAGTGGGTATTGGAAAGCAACCGGAGCGGATAAACCGATCGGAAAACCAAAAGCGTTAGGGATCAAGAAGGCTTTGGTGTTCTATACTGGGAAAGCACCAAAAGGAGTGAAAACCAATTGGATCATGCATGAATATCGCCTTGCCAATGTTGATAGATCTGCTGGCAAGAAAAACAACTCGAGGCTTGATGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACATGGGCACTGAAAAGTTTACAGGGGAGGTTCATGATTATGAGCATGAGCATGAGATGAAGCCAGAAATTCATAAGTTGGGGAATGACCAATTCTACATGGACACGTCAGATTCAGTACCCAGGCTTCACACGGATTCGAGCAGCTCGGGTCACGTGGTTTCACCTGATGTCAAGTGCGAGAAGGAGGTGCAGAGTGATCCAAAATGGAATGAAATAGAGCTACAGCTAGATAACGTCTTTGATTTTCAGTTCAATTACTTGGATAATAACGCGTTGGTGGATGACCCTTTTGGAACTCAGGTCCAGATGAATGCCCTTTCACCATTGCAGGACATGTTCATGTACCTACAGAAGCCATTTTGA 858 0.4441 MQGELELPPGFRFHPTDEELVNHYLCRKCSGQSIAVPVIKEIDLYKFDPWQLPEMGFHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYTGKAPKGVKTNWIMHEYRLANVDRSAGKKNNSRLDDWVLCRIYNKKGKIEKYNMGTEKFTGEVHDYEHEHEMKPEIHKLGNDQFYMDTSDSVPRLHTDSSSSGHVVSPDVKCEKEVQSDPKWNEIELQLDNVFDFQFNYLDNNALVDDPFGTQVQMNALSPLQDMFMYLQKPF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00959 285 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Rops10g00959 285 PANTHER NAC TRANSCRIPTION FACTOR 56 7 201 - -
Rops10g00959 285 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Rops10g00959 285 FunFam NAC transcription factor 16 161 - -
Rops10g00959 285 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Rops10g00959 285 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00959 Rops-Chr10 20838916 20840609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00959 1 285 NAC Transcription Factor Family AT1G01720 62.752 1.06e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g00959 NAM 7.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00959 - - gmx:100814504 498.434