Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00954 ATGTCGACCTCAAAGAAAACCAAGGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAAAGAGAGCAACCTTCAAGTGACTTTCTCGAAGCGTCGAAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGTTGATGTTGCTCTTGTTGTGTTCTCACCTGGTGAAAAGGTTTTTTCCTTTGGCCACCCCAACGTTGATATTGTGATAGATCGCTATCTCAAACGGGCCACACCACAACACACTGGAACCATACAGTTCATTGAGGCTTACCGTAATGCCAACGTGGGTGACCTTAATGCACAACTCACTCATATCAATTACCAACTTGATACTGAGAGGAAGCATGGTGAAGAGTTGAGTCGTTTGCGTAAGGTAACACATACTCAATTCTGGTGGACATGTCTTGTTGAAAACATGAATAGGGCCCAACTTGAACAATTTAAAGTGGCGTTGGAGGATTTGAAGAAACATGTCACTCGTTATTGTGATAGGCTCCTTATTCAGGGTGTTAATACTACTAACTCAACTCAATCTTTTGCATGTGGCTCTTCTTCCAACCCTTTCCCTCCTCCTCATCAGCCACCTCCAACTCTTCAGTTGTTTCCACCACAGTTCTTTTAG 633 0.4392 MSTSKKTKGRQKIEMKKMSKESNLQVTFSKRRSGLFKKASELCTLCGVDVALVVFSPGEKVFSFGHPNVDIVIDRYLKRATPQHTGTIQFIEAYRNANVGDLNAQLTHINYQLDTERKHGEELSRLRKVTHTQFWWTCLVENMNRAQLEQFKVALEDLKKHVTRYCDRLLIQGVNTTNSTQSFACGSSSNPFPPPHQPPPTLQLFPPQFF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00954 210 MobiDBLite consensus disorder prediction 182 201 - -
Rops10g00954 210 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Rops10g00954 210 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Rops10g00954 210 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Rops10g00954 210 PANTHER MADS BOX PROTEIN 10 164 - -
Rops10g00954 210 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Rops10g00954 210 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Rops10g00954 210 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Rops10g00954 210 Gene3D - 88 182 - -
Rops10g00954 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Rops10g00954 210 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Rops10g00954 210 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Rops10g00954 210 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00954 Rops-Chr10 20767380 20768012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00954 5 190 Type I MADS-box Gene Family AT5G60440 56.085 5.32e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops10g00954 SRF-TF 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00954 - - pvu:PHAVU_007G047900g 239.58