Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00949 ATGGGAGACGGCGCTGGAACCAACCGTTCCAACAGCAACAACAGCGGCAGCAACAAACCGGAGTGGTTGCAACATTATGATCTGATAGGGAAGATTGGAGAAGGAACCTACGGTCTCGTTTTCCTCGCTCGGATCAAATCTCAAACCAATCGTGGAAAATCCATCGCCATCAAGAAATTCAAGCAATCTAAGGATGGAGATGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTACTGAGGGAGATAACACATGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGCGGACATGTCTCTTTATCTGGCTTTTGATTATGCCGAGCACGACCTTTATGAAATAATAAGACATCATAGGGACAAGGTCAACCTATCCATTAACCAGTACACTGTTAAATCATTACTATGGCAGTTGCTCAATGGACTAAACTATCTGCACAGTAATTGGATAATACATCGAGATTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCCCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTGACCATCTGGTATCGTGCACCTGAATTGCTTCTTGGAGCAAAACATTACACTAGTGCTGTTGATATGTGGGCTGTGGGATGTATTTTTGCTGAGTTGTTGACCTTGAAGCCGCTATTTCAAGGTGCAGAAGTTAAAGCTACACCAAATCCCTTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCGCAACATATACAAGGACACAAATATGACAATGCTAGCCTCTATAGTGTCGTACACCTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACAACCTGGGCGCAATGCACTTGTACCCTGCCAACCTGGAGAGACGTTTGTGAATTATCCCACACGTCCTGTGGACACAACAACAGATTTTGAAGGGACAACCAACATGCAACCTTCACAGCCGGTTTCATCTGGAGCTGCAGTTGCTGGCAACATGTCTGGTCATGTATCAAATAGATCTGTCCCTCGGCCAATGAATGTTGTTGGCATGCAAAGAATGCATCATCAGGCAATGCAAGCTTACAATCTCACATCCCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGCGTCACAATGCAACGAGGTGTTCCACAGGCCCATCAGCAGCAACAGTTGAGAAGAAAAGACCAGATGGGGATGCCAGGATATCCTCCCCAACAGAAGTCAAGACGTATGTAA 1422 0.4423 MGDGAGTNRSNSNNSGSNKPEWLQHYDLIGKIGEGTYGLVFLARIKSQTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNLSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNASLYSVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPQPGRNALVPCQPGETFVNYPTRPVDTTTDFEGTTNMQPSQPVSSGAAVAGNMSGHVSNRSVPRPMNVVGMQRMHHQAMQAYNLTSQAGMGGGMNPGGVTMQRGVPQAHQQQQLRRKDQMGMPGYPPQQKSRRM* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00949 473 CDD STKc_CDK8_like 26 336 - -
Rops10g00949 473 Pfam Protein kinase domain 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00949 473 ProSitePatterns Protein kinases ATP-binding region signature. 32 59 IPR017441 GO:0005524
Rops10g00949 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Rops10g00949 473 MobiDBLite consensus disorder prediction 377 400 - -
Rops10g00949 473 SUPERFAMILY Protein kinase-like (PK-like) 21 337 IPR011009 -
Rops10g00949 473 Gene3D Transferase(Phosphotransferase) domain 1 110 350 - -
Rops10g00949 473 FunFam Putative cyclin-dependent kinase E-1 110 349 - -
Rops10g00949 473 PANTHER CELL DIVISION PROTEIN KINASE 25 341 - -
Rops10g00949 473 MobiDBLite consensus disorder prediction 430 473 - -
Rops10g00949 473 Gene3D Phosphorylase Kinase; domain 1 10 109 - -
Rops10g00949 473 MobiDBLite consensus disorder prediction 377 402 - -
Rops10g00949 473 SMART serkin_6 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00949 473 ProSiteProfiles Protein kinase domain profile. 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00949 473 FunFam Cyclin-dependent kinase e-1 14 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00949 Rops-Chr10 20734992 20744328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00949 1 473 Core Cell Cycle Gene Families AT5G63610 75.732 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Rops10g00949 Pkinase 8.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00949 K02208 - gmx:100813433 863.603