Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00942 ATGGCTGAAGGGAAAGAAGAAAATGTATGTGGGTCAAATATTGGCCTTAATGTTGGTACTGGCTGTGGCAGTGGCAGTGACAGCTTCTTCATCCGAACTAACAATCAGGACTATCACAACATGTTTCCTGATGTTGTGCTAATTGCTGATGATTCAAGAGCATTGCAAATGTTGACCACTGAAGATGTGCTTGCCATGCGATTTGATTCCTATGAAGCTGGGGAGTCATTTTACCGTAAATATGCTTTAGCTGTTGGCTTTATTGTTGAAAAGGATTTCACAGGTAAAAACAAGAAGGAGGAGGTTATCACGAAAAGATGGGTTTGTAATAGAGCATGCTCTCAGCAAAAGAAATATCTAAAAAAAGTTAACTACCGGTTGGATCCTGGGCCATCAACAACAAGAGTTCATTGTCATGCTTCATTTTGGTTAAGTCTTGACCCTGTCAATCATAAGTGCATTGTAAAAGAATTTGTGGCAGAGCATACACACGAGTTGGCACCAAGATGCAAATCACATCTCCAAATTGATTTGCCTCTGGCGAAATTAGAGAATGTGAAAGAGGAAGGATTGATAAATGTTGAAGCACAGCCTATCCAAGTAGTGGATTATTTGGTAAAACAAGAAGTTGATTGTGATCAAGATGGTATAGGAAGACAGGATATGCAAACTTCTGGTGATGCGAATTGTGGAAATGAGATTACAATCAGTGAGCTGGAAGCTGCCCTTTTTTATCTTAGTGCTAAGAAGGATTCAGACCCTGGCTTGTTCTATGAAACAGAAGTTGTTGAAGGCCGTTTAATGTACTTATTTTTGGCAGACTCAACATCTCAGTTAGATTATGCATGCTTTGGAGATGTGATGGCTGTCTATAGGACAAATTCATATAAGATGCACTTTGTTATTTTGGCTGGTCTCAATCATCATCATCAAACTTGTGTATTTGGATGTGCTTTACTTCATGATGAAACTTTTGAGGCATACTCATGGTTGTTTCAAACATTTCTTCATGTAATGCACGGTTGCATGCCCATATCTGTGGTGACTGATGGTCATAAAGCTTTATATAAAGCTATTAAGCATGTGATGCCACGATCACGACATCGGATGTGCACATGGCATCTTCTGAATGATGCCCGTTTCATTGTTAACAAACCATCCTTCATATCTGACTTTAAAGTATGCATGCTGAAGGTTCTTTCACAAGATGATTTTGAGCTTAAATGGAAGGCGATGGTTGACAAGTATAAATTGTCTGAAAACCCATGGATACATTGGATTTATAAGAAACGTCATATGTGGGCAGAAACTTACTTGAGGGGACATTTCTGGGCTGGGTTGCAAAGCACAAGATTATGTGTAGGTATTAATGAACATTTGAGTAGGTTTTCACAAAATGAACTGAAACTGCATCAGTTTATCGATCAGTTTGATATGGCAGTTAATAGAGTCCGGTGGAATGAGGCGAAGGCTCAACATGAATCCACCCATGTGCCATTTGGTCTCACAACTCCATTGATGAAAATAGAGAAACATGCAGCTGAAGTGTTCACTACAGAATCTTTTAAAAGATTTCTTTCAGAGCTTCGGTTGGAGACTCATTTCTTTATGTTAAACAAAAATGAGGGATCTAACCACCGCACATACAAATTGAGTAACTATGAGCAGCACTTGGCATATGAAGTTATGTTCAAGGCTAGTGGTCCAAGTATTAAATGCTCATGCTTGAAGTTTGAGACATTGGGATTTCCTTGCTGTCATGCCATTCATGTAATCATATATGAGGGATTAGAAAAAATTCCCCAAAATCTCATACACCCCAGATGGACTAAATCAGCAAAATCAACTACACAATTTTGGCAGCGTGCCGTGCCTCCTATATCTAGTGATATTATGACAAGATTGATGCGTTATGGTACTTTAATGTCTGCTGGTTCCATGATATGTTACTTGGGGTCAAAATCAGACCAGGCATTTGACTATGTGTCCATGGATTTACTAAAGTCAAAGCATGAAATACAAGAGCGCTATTTTGCCCGTAATGCAACCAATAGTGGGACCCTTGGTATGGGAAGGGATCTTGACACCAATCCTCTTGAATCTCGGTGA 2109 0.3936 MAEGKEENVCGSNIGLNVGTGCGSGSDSFFIRTNNQDYHNMFPDVVLIADDSRALQMLTTEDVLAMRFDSYEAGESFYRKYALAVGFIVEKDFTGKNKKEEVITKRWVCNRACSQQKKYLKKVNYRLDPGPSTTRVHCHASFWLSLDPVNHKCIVKEFVAEHTHELAPRCKSHLQIDLPLAKLENVKEEGLINVEAQPIQVVDYLVKQEVDCDQDGIGRQDMQTSGDANCGNEITISELEAALFYLSAKKDSDPGLFYETEVVEGRLMYLFLADSTSQLDYACFGDVMAVYRTNSYKMHFVILAGLNHHHQTCVFGCALLHDETFEAYSWLFQTFLHVMHGCMPISVVTDGHKALYKAIKHVMPRSRHRMCTWHLLNDARFIVNKPSFISDFKVCMLKVLSQDDFELKWKAMVDKYKLSENPWIHWIYKKRHMWAETYLRGHFWAGLQSTRLCVGINEHLSRFSQNELKLHQFIDQFDMAVNRVRWNEAKAQHESTHVPFGLTTPLMKIEKHAAEVFTTESFKRFLSELRLETHFFMLNKNEGSNHRTYKLSNYEQHLAYEVMFKASGPSIKCSCLKFETLGFPCCHAIHVIIYEGLEKIPQNLIHPRWTKSAKSTTQFWQRAVPPISSDIMTRLMRYGTLMSAGSMICYLGSKSDQAFDYVSMDLLKSKHEIQERYFARNATNSGTLGMGRDLDTNPLESR* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00942 702 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 671 IPR031052 GO:0006355
Rops10g00942 702 SMART 26again6 571 598 IPR006564 GO:0008270
Rops10g00942 702 Pfam SWIM zinc finger 571 591 IPR007527 GO:0008270
Rops10g00942 702 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Rops10g00942 702 Pfam FAR1 DNA-binding domain 76 167 IPR004330 -
Rops10g00942 702 ProSiteProfiles Zinc finger SWIM-type profile. 560 596 IPR007527 GO:0008270
Rops10g00942 702 ProSitePatterns EF-hand calcium-binding domain. 227 239 IPR018247 -
Rops10g00942 702 Pfam MULE transposase domain 290 376 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00942 Rops-Chr10 20641844 20643952 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops10g00942 FAR1 1.1e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00942 - - ccaj:109803703 674.47