Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00934 ATGGTGTTCTTCAACACAAGCCCCCATGCCTCAAACTACTCGGGTGTTCTCAAAATATTGGCAAGGTGGCTTATATTCCTCAGTGTCTCCAGACTCTCTTATCCAATCACAGATCCTGACGTGGAAGGTGAAGCTTTGCTTGAATTTTTGAGGGCCCTCAATGATTCCAATAATCAAATTAGAGACTGGGATCGTAATTTTGTGAGCCCATGCTATAGTTGGTCAAATGTCACTTGTAGTAACAGACATGTTATGTCACTGAACCTGGCATCGAATGGATTTTCTGGAACACTTTCTCCCTCAATTGCCAAATTAAAATATTTGGTTAGCTTGGAATTGCAGAACAACAATCTTGCAGGACCCTTACCTGACTACATTGCAAACTTGACACACCTAGAATATCTAAATCTGGCAGACAATAATTTTAATGGTTCTATACCAGCTACATGGGGCCAACTTTCCAGTCTAAAGCATCTGTTCTTGAGAGGGAATGACTTATCTGGATGCATTCCAGATACTCTTGCAAATCTTAGTGCGTTGGCAGAACTGGATCTTTCATCTAATGGGCTTACTGGAAGTATCCCAATGCCACTCTTTTCGATTCCTTTGTTTAATTTTTCAGATACACTTCTTCATTGTGGCTCTAACTTGGAGCAGCCTTGTGTTTCTAATTCTGCTCGTCCTGCTTCAACAAAGAAATCAAAACTTGCAGTTGTTGTTAGTTTTGCAAGTTGTGGTTCATTTGCACTTCTGTGTCTTGGGGTTATCTTTGCATATAGATACTATCACATGCAGAGACACAAAAGTGATGTCTTTTTTGACGTTCCAGGTGAAGATGAGACTCAAATTTCCTTTTGGCAATTAAGAAGATTTTCTTGGCGTGAACTCCAACTTGCTACTAAAAGTTTCAGTGAAAGCAATGTAATTGGTCAAGGAGGCTTTGGGAAAGTTTATAAAGGAGTACTCTCAGATGGTACAAAAGTAGCTGTGAAACGCCTTGCTGATTATCATAATCCTGGTGGAGAGGCTGCATTCCAAAGAGAGGTTCAACTTATAAGTGTTGCAGTTCATAGGAATCTCATAAGATTAATTGGGTTCTGTACAACCTCTACTGAAAGAATCCTAGTATATCCTTTCATGGAAAATCGAAGTGTAGCATATCAATTGAGAGATTTAAAACCGGATGAGAAAGGTTTGGACTGGCCAATGAGGAAACGTGTGGCTTTTGGAACAGCTAGTGGCTTGGTGTATCTGCACGAGCAATGCAATCCTAAGATAATACACCGTGATTTGAAGGCGGCAAATATACTACTAGATGATGAATTTGAAGCTGTTCTAGGAGATTTTGGGCTAGCTAAGCTGGTAGATACAAGGATGACTCATGTTACCACTCAAGTGCGAGGCACAATGGGTCATATATCCCCAGAATATTTATCCACTGGAAAATCATCAGAAAAGACAGATGTATTTGGATATGGTATTACACTTCTTGAGCTAGTCACTGGTCAACGTGCTGTGGACTTGTTTCGGCTTCAGGAGGAGGAGAATGTTTTTCTGCTTGATCATATCAAAAAGCTACTGAGAGAAAACAGGTTGGAGGATATAGTGGATAGAAATTTGGAGATTTATGATCCCAAAGAAGTTGAGACCATTGTTCATGTTGCATTGCTTTGCACTCAAGGGTTGCCTGAGGAGCGTCCAACCATGTCAGAGGTGGTAAAAATGCTGCAGGGAGTGGGTTTGGCAGAGAGATGGGCTGATTGGGAGCATCAGGAAGAGGTGAGTAATCAATTCATGTCTCACCAGTTTGTTTGGACTAATGAATCTCCTCAAAATCAAGAAGCTATACAGCTTTCCAGAGCAAGATAA 1869 0.4077 MVFFNTSPHASNYSGVLKILARWLIFLSVSRLSYPITDPDVEGEALLEFLRALNDSNNQIRDWDRNFVSPCYSWSNVTCSNRHVMSLNLASNGFSGTLSPSIAKLKYLVSLELQNNNLAGPLPDYIANLTHLEYLNLADNNFNGSIPATWGQLSSLKHLFLRGNDLSGCIPDTLANLSALAELDLSSNGLTGSIPMPLFSIPLFNFSDTLLHCGSNLEQPCVSNSARPASTKKSKLAVVVSFASCGSFALLCLGVIFAYRYYHMQRHKSDVFFDVPGEDETQISFWQLRRFSWRELQLATKSFSESNVIGQGGFGKVYKGVLSDGTKVAVKRLADYHNPGGEAAFQREVQLISVAVHRNLIRLIGFCTTSTERILVYPFMENRSVAYQLRDLKPDEKGLDWPMRKRVAFGTASGLVYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRMTHVTTQVRGTMGHISPEYLSTGKSSEKTDVFGYGITLLELVTGQRAVDLFRLQEEENVFLLDHIKKLLRENRLEDIVDRNLEIYDPKEVETIVHVALLCTQGLPEERPTMSEVVKMLQGVGLAERWADWEHQEEVSNQFMSHQFVWTNESPQNQEAIQLSRAR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00934 622 SMART serkin_6 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00934 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Rops10g00934 622 FunFam Somatic embryogenesis receptor-like kinase 1 380 596 - -
Rops10g00934 622 ProSiteProfiles Protein kinase domain profile. 303 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00934 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 24 586 - -
Rops10g00934 622 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 40 193 - -
Rops10g00934 622 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Rops10g00934 622 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Rops10g00934 622 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Rops10g00934 622 SUPERFAMILY L domain-like 43 204 - -
Rops10g00934 622 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Rops10g00934 622 Pfam Leucine rich repeat 131 190 IPR001611 GO:0005515
Rops10g00934 622 Gene3D Ribonuclease Inhibitor 39 223 IPR032675 -
Rops10g00934 622 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Rops10g00934 622 Pfam Protein kinase domain 304 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00934 622 Gene3D Transferase(Phosphotransferase) domain 1 380 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00934 Rops-Chr10 20485655 20491075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00934 39 617 Receptor kinase-like Gene Family AT5G65240 57.411 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Rops10g00934 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00934 - - pcin:129307818 931.398