Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00926 ATGGCCGCAGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTAACGTGCAACTGAAACAACCGTTCCTCCATTCCGAACGAACCAGAACAACAACCATAACAACCTCTAACAGATTCCACTCACACAAACCTTGCTTTTCTTCTTCTCGCTCTCTAACATCCTCCTCCACCTTTCGCCGCCGGGTCTTCTGCCAGGTGGCAAGCACAAACACACTCTCCGACTTCGAATCCGCCGCAAAAGCTGGCGAGGATCGTCTCTCTAAGGTGCCGGTGTCTAATATAAGGAACTTCTGTATCATTGCTCATATTGACCATGGCAAATCCACCTTGGCTGATAAGTTGCTTCAAGTCACTGGCACTGTGCACCAGCGAGAGATGAAGGATCAGTTTCTAGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTCGCATGCGTTATGTGTTTGAAAATGAACCATATTGCTTAAATCTTATAGATACTCCAGGCCATGTCGACTTCTCATATGAGGTTTCTCGATCTCTTGCTGCATGTGAGGGTGCTCTCCTGGTAGTAGATGCTTCTCAGGGGGTTGAAGCGCAAACACTTGCTAATGTTTATTTGGCTTTGGAGAACAATCTAGAAATTATCCTTGTTTTGAACAAAATAGATCTTCCAGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAATGCAATTCTCTGCTCTGCAAAGGAAGGAATAGGAATAATTGATATTCTCAACGCAATTGTTGCAAGAATTCCTGCTCCTGCTGATACATCTGAAAGGCCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATACAGAGGTGTTATTGTATACTTTCGAGTAGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAGGATTATTTTGCTGATGAAATTGGAGTTTTGTCTCCTAATCAACTACAAGTTAAAGAATTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCCGATGCCAGAGTGGGTGACACCATTACTCAATATGGCAGAAAGGCGGATAATTCACTCCCTGGATATGAGGAGGCCACTCCTATGGTGTTCTGTGGCCTGTTTCCTGTTGACGCTGACCAATTTCCCGAGCTACGTGATGCACTTGAGAAGCTACAACTCAATGATGCTGCACTCAAGTTTGAACCCGAGTCTTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTTCATATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAATCTGATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTGTAAATGGTGATACTGTTGAATGCTCAAATCCATCTATACTCCCTGAACCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAGGACTATATTGGTTCACTAATGGAGCTGGCACAAGAAAGAAGAGGGGAGTTCAAAGAAATGAAATTTATCACCGAAAATAGGGCATCAATCAGCTATGAATTACCACTAGCAGAGATGGTTGGTGATTTCTTTGACCAGTTAAAGTCAAGGAGTAAGGGTTATGCTAGTATGGAGTATACCTTTGTCGGGTACAAAGAAAGTGTTCTAGTTAAACTTGACATACGGATAAATGGTGATAGTGTGGAGCCATTGGCCACAATTGTGCACAATGATAAGGCATATTCTGTGGGAAGGGCTTTGACTCTGAAGTTGAAGGAGCTCATACCACGGCAAATGTTTAAAGTACCAATTCAAGCATGCATAGGAGCAAAAGTGATTGCTAGTGAGGCGTTATCTGCAATAAGGAAGGATGTATTAGCCAAATGCTATGGTGGGGACATTTCGAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTGCCTCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGAACCGGCTGTCTCCACTGGCTGCTGGCGTTCAACACGTTTGTTTTCAAAACGAGGTCAATTGA 2130 0.423 MAAEICGGSLFLSVKTNVQLKQPFLHSERTRTTTITTSNRFHSHKPCFSSSRSLTSSSTFRRRVFCQVASTNTLSDFESAAKAGEDRLSKVPVSNIRNFCIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIILVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARIPAPADTSERPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPNQLQVKELYAGEVGYLSASIRTVADARVGDTITQYGRKADNSLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEPESSSAMGFGFRCGFLGLLHMEIVQERLEREYNLNLITTAPSVVYRVNCVNGDTVECSNPSILPEPGKRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGEFKEMKFITENRASISYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGYKESVLVKLDIRINGDSVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGAKVIASEALSAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKENRLSPLAAGVQHVCFQNEVN* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00926 709 FunFam Translation factor GUF1, mitochondrial 571 645 - -
Rops10g00926 709 FunFam Translation factor GUF1, mitochondrial 459 569 - -
Rops10g00926 709 Pfam GTP-binding protein LepA C-terminus 579 685 IPR013842 -
Rops10g00926 709 Gene3D - 459 570 - -
Rops10g00926 709 CDD EF4_III 384 459 - -
Rops10g00926 709 Pfam Elongation factor Tu GTP binding domain 95 272 IPR000795 GO:0003924|GO:0005525
Rops10g00926 709 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 94 275 IPR000795 GO:0003924|GO:0005525
Rops10g00926 709 FunFam Elongation factor 4 93 276 - -
Rops10g00926 709 Gene3D - 93 276 IPR027417 -
Rops10g00926 709 PANTHER TRANSLATION FACTOR GUF1-RELATED 73 686 IPR006297 GO:0005525
Rops10g00926 709 SUPERFAMILY Translation proteins 256 378 IPR009000 -
Rops10g00926 709 Pfam Elongation factor Tu domain 2 296 366 IPR004161 GO:0005525
Rops10g00926 709 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 88 688 IPR027518 -
Rops10g00926 709 SUPERFAMILY EF-G C-terminal domain-like 490 584 IPR035647 -
Rops10g00926 709 SMART EFG_C_a 489 575 IPR000640 -
Rops10g00926 709 CDD EF4_II 282 366 - -
Rops10g00926 709 FunFam Translation factor GUF1, mitochondrial 377 458 - -
Rops10g00926 709 NCBIfam translation elongation factor 4 95 686 IPR006297 GO:0005525
Rops10g00926 709 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 134 149 IPR031157 -
Rops10g00926 709 Gene3D - 572 645 IPR038363 -
Rops10g00926 709 CDD LepA 97 274 - -
Rops10g00926 709 NCBIfam small GTP-binding protein domain 97 266 IPR005225 GO:0005525
Rops10g00926 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 294 IPR027417 -
Rops10g00926 709 PRINTS GTP-binding elongation factor signature 165 175 IPR000795 GO:0003924|GO:0005525
Rops10g00926 709 PRINTS GTP-binding elongation factor signature 217 226 IPR000795 GO:0003924|GO:0005525
Rops10g00926 709 PRINTS GTP-binding elongation factor signature 98 111 IPR000795 GO:0003924|GO:0005525
Rops10g00926 709 PRINTS GTP-binding elongation factor signature 181 192 IPR000795 GO:0003924|GO:0005525
Rops10g00926 709 PRINTS GTP-binding elongation factor signature 141 149 IPR000795 GO:0003924|GO:0005525
Rops10g00926 709 FunFam Translation factor GUF1, mitochondrial 277 375 - -
Rops10g00926 709 Pfam Elongation factor G C-terminus 490 576 IPR000640 -
Rops10g00926 709 CDD lepA_C 492 570 IPR035654 -
Rops10g00926 709 Gene3D Translation factors 277 376 - -
Rops10g00926 709 Hamap Elongation factor 4 [lepA]. 91 689 IPR006297 GO:0005525
Rops10g00926 709 SUPERFAMILY EF-G C-terminal domain-like 383 461 IPR035647 -
Rops10g00926 709 Gene3D Elongation Factor G (Translational Gtpase), domain 3 377 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00926 Rops-Chr10 20410584 20422314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00926 96 343 Eukaryotic Initiation Factors Gene Family AT3G22980 34.483 7.98e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00926 K21594 - gmx:100809693 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00926 10 20410584 20422314 Rops10g00926 10 20410584 20422314 ECH