Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00911 ATGGGTAGATCTCCTTGTTGTGAGAAAGAACACACAAACAAAGGAGCTTGGACCAAAGAAGAAGATGAACGCCTCATAAACTACATCAAGATTCATGGTGAAGGCTGTTGGAGATCTCTTCCAAAAGCTGCTGGGTTGCTGAGGTGTGGCAAGAGTTGCAGACTCAGATGGATAAATTATCTTAGACCTGATCTAAAGAGGGGAAACTTCACCGAAGAAGAAGATGAGCTTATCATTAACCTCCATAGCGTACTTGGAAACAAATGGTCTCTAATAGCTGCAAGGTTACCTGGAAGAACTGATAATGAAATCAAGAACTATTGGAACACCCATATCAAGAGAAAACTTTATAGCCGTGGAATTGATCCTCAAACTCATCGACCGCTCAACGGTTCAACCACCACCATCACCACCACAGTTCCTCCACCAAGCAATAAGAAGATGAACAATGAAAGCAATAGCAGCAGCAACAACAACCATAATAATAATAATATTAACAATAGCAGCAGCACTTTTCAGTTAGTGAAGATTGGAACCGACTTGGTTGTTGGTGAAGAATCAAATAGCAGCAGTGGTGTTACCACAGAGGAAGCTTATTCTCATAAACTCAACTTGGAACTTTCCATTGGTCTTCCCTCTCAGCAGCACCAAGTTTCTTCTGTGAACCAAGACAAGTTGAAGCCACGAAAGGAGCAACAAGAACCGCATGTTTTGTACCACTGCTTTGGGATTGGGAACGTTACTGGTCAAGGTGTGTGCGTTTGTTATAATCTAGGGTTTCAAAGTAACCAACCATGTCGTTGCAAAGCCATGGGTACCGCTAGTGCTACAGATAATAATCTGTTTTCATTTTACAGACCCATGAATATTTAG 873 0.417 MGRSPCCEKEHTNKGAWTKEEDERLINYIKIHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSVLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNGSTTTITTTVPPPSNKKMNNESNSSSNNNHNNNNINNSSSTFQLVKIGTDLVVGEESNSSSGVTTEEAYSHKLNLELSIGLPSQQHQVSSVNQDKLKPRKEQQEPHVLYHCFGIGNVTGQGVCVCYNLGFQSNQPCRCKAMGTASATDNNLFSFYRPMNI* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00911 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops10g00911 290 MobiDBLite consensus disorder prediction 125 168 - -
Rops10g00911 290 CDD SANT 69 112 IPR001005 -
Rops10g00911 290 Gene3D - 14 66 - -
Rops10g00911 290 MobiDBLite consensus disorder prediction 119 168 - -
Rops10g00911 290 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops10g00911 290 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops10g00911 290 CDD SANT 16 61 IPR001005 -
Rops10g00911 290 SMART sant 13 63 IPR001005 -
Rops10g00911 290 SMART sant 66 114 IPR001005 -
Rops10g00911 290 FunFam Myb transcription factor 68 137 - -
Rops10g00911 290 FunFam MYB-related transcription factor 13 66 - -
Rops10g00911 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops10g00911 290 Gene3D - 69 116 - -
Rops10g00911 290 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 213 - -
Rops10g00911 290 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops10g00911 290 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops10g00911 290 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00911 Rops-Chr10 20233733 20234970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00911 1 221 MYB Transcription Factor Family AT4G09460 58.120 3.07e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g00911 Myb_DNA-binding 8.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00911 K09422 - gmx:778033 417.542