Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00905 ATGTCAAGTTTTCACGTCGGTGGAAAGGTAGTGGACAGAGTTGATTTGCTGAGGAAGAAGCAATGGCCATGGCGCCTCGACGTTTGGCCTTTCGCTATTTTATACATCGCTTGGGTATCGGCTATTCTTCCCAGCCTTGACTTCGTTGATGCCGCCATTGTTTTTGGTGGTATCGTTTCTCTTCACATCCTCGTTTGGCTCTTCACCGGTTGGTCCGTTGATTTCAAATGTTTCGCTCATTATACCAAGGTTAAGAATATTCACCAAGCTGATTCGTGCAAGATAACTCCGGCTAAGTTTTCGGGTTCTAAGGAAGTCGCGCCTCTTCATTCTCGGAAATCACCTGCAGGTTCTTCATCAACGGTAGATCTGGAAGAGATTTACTTTGATTTTAGAAAACAATGTTTTGTCTATTCAAAGGAGAAGGGGACTTTTTGCAAACTTTCTTACCCTACCAAGGAAACATTTGGATATTATCTCAAGAGTAGTGGCCATGGCTCTGAAGCTAAGGTTCTCACAGCTACTGAGAAATGGGGCCGTAATGTATTTGATTATCCTCAGCCAACATTTCAGAAATTGTTGAAAGAGCACTGCATGGAGCCTTTTTTCGTATTTCAGGTTTTCTGTGTTGGTCTCTGGTGTTTGGATGAATATTGGTATTATAGTTTGTTCACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAAGACTCTGACTGAGTTAAGACGTGTTAGAGTGGATAGTCAGATCCTAATGGTACATCGCTGTGGCAAGTGGGTAAAACTCTCTGGTACAGATCTTTTGCCTGGAGATGTTATCTCTATTGGTCGCTCTTCTGGTCAGAATGGAGAGGAGAAATCTGTACCTGCAGACATGCTTATATTGGCTGGAAGTGCGATTGTGAATGAGGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGATTTCAATCATGGGTAGGGGGATTGAGGAGAAGTTGTCAGCAAAGCGAGATAAAAGCCACGTATTATTTGGTGGAACTAAAATATTGCAGCACACTCCAGATAAGACCTTTCCTCTAAAAACACCAGATGGTGGCTGCTTGGCTGTAGTCCTGAGAACAGGATTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGGTTATTCATTTTATTCTTGGTTGTATTTGCTCTAATTGCTGCTGGTTATGTGCTTATTAAGGGCCTGGAAGATCCCTCAAGGAGCAAGTATAAACTTATACTAAGCTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCTCTGATTGCACTGGCACGGCGTGGAATTTTTTGCACAGAACCTTTTCGAATACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACACTTACATCTGATGACATGGAGTTTTCTGGAGTTGTTGGGTTGACAGAAACTACAGAGTTGGAATCTGATATGAGTAAAGTTCCTGTGCGAACAGTAGAAATCCTGGCTTCTTGCCATGCATTAGTATTTGTTGAGAATAAACTGGTTGGTGACCCTCTTGAGAAGGCTGCTCTTAAAGGAATTGATTGGAGTTATAAATCTGATGAGAAGGCTGTTCCAAAAAAGGGAAATGGACATCCTGTCCAAATTGTTCAGCGGTACCATTTTGCATCTCACTTAAAACGAATGGCAGTTGTTGTCCGCATTCAGGAGGAATTTTTAGCCTTTGTGAAGGGTGCCCCAGAAATTATACAAGATAGGCTCATTGATATACCACCATCATATGTTGAGACCTACAAAAAATATACACGTCAGGGGTCTCGTGTTCTTGCTCTGGCTTACAAGCCTCTCTCCGACATGACAGTCAGTGAAGCTAGAAGCTTGGACAGGGATATGGTGGAGAGTGGACTTACTTTCGCTGGCTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTGTTTTATCTGAATTGGAAGGATCTTCACATGACTTGGTGATGATTACTGGTGACCAAGCTTTAACAGCTTGCCATGTTGCTAGCCAAGTTCATATTATATCAAAACCCATATTAATCCTTGTTCCAGCAAGTAGTGGTGAAGGATATAATTGGGTGTCCCCTGATGAGACTGAAAGCATTCGCTACAGTGCGAAAGAGGTTGAATCTCTATCAGAGACTCATGATCTCTGTGTTGGAGGTGATTGCTTTGAGATGTTGCAACAAACATCTGCCCATCTTCTAGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTGCTCCTGAGCAGAAAGAACTTATCATGACCACTTTCAAAACAGTGGGACGGGTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCGACGTAGGAGTTGCTCTTCTGAATGCATTGCCTCCAACTCAAAGTGGAAACTCCTCTTCAGATTTATCTGGGGAAGAAGGTTCAAAATCTGTCAAGCAAAAGAAATCTAGGCCTGCACCGGAAGCATCTGGAAAGAATGTTAGCCCAATTGGAGAAGGCACTTCAAAAGCCAAAGTTTCTTCAAAATCAGATTCCACCAGCCATTCATCTGTTAACCGTCATCAGGCAGCTGTTGACATGCAACGACAGAAGCTTAAAAAGATGATGGATGAGCTTAACGAGGAAGGAGATGGTCGTGCACCCATGGTTAAGCTTGGTGATGCCTCAATGGCATCCCCATTCACCGCAAAGCATGCATCTGTTGCTCCCACCACTGACATAATTCGTCAAGGTCGGAGTACCCTAGTGACAACCCTCCAGATGTTTAAAATTCTGGGCCTCAACTGCCTTGCTACGGCATATGTTTTGAGTGTCATGTATCTGGATGGTGTCAAGCTAGGTGATGTTCAAGCCACAATAAGTGGTGTCTTTACTGCTGCTTTTTTCCTCTTTATCTCACATGCACGCCCTCTTCCCACTCTTTCAGCTGAACGTCCCCACCCCAACATCTTCTGTGCTTATGTCTTTCTATCCCTCTTGGGACAATTTGCTATTCACCTGTTTTTTCTGATTTCATCTGTGAAAGAAGCTGAAAAATATATGCCAGATGAATGCATTGAACCAGATGCAGATTTTCATCCCAACCTGGTGAATACTGTTTCCTACATGGTGAGCATGATGCTTCAGGTGGCCACATTCGCTGTGAACTATATGGGCCATCCCTTCAACCAGAGTATTCCCGAAAACAAGCCGTTCCTGTACGCACTTGTTGCTGCTGTTGGTTTCTTTACTGTGATCACATCTGATCTCTTCAGAGACTTAAATGACTGGTTGAAGTTGGTGCCGTTGCCGGTGGGACTAAGGGATAAACTATTGATTTGGGCGTTTCTAACGTTTTTGGTATGCTATTCATGGGAGAGACTGTTGAGGTGGGCCTTCCCTGGTAAGATCCCAGCTTGGAAGAAGCGACAACGGCTTGCTGTATCTAATTTAGAAAAGAAACAGGTCTAA 3576 0.4312 MSSFHVGGKVVDRVDLLRKKQWPWRLDVWPFAILYIAWVSAILPSLDFVDAAIVFGGIVSLHILVWLFTGWSVDFKCFAHYTKVKNIHQADSCKITPAKFSGSKEVAPLHSRKSPAGSSSTVDLEEIYFDFRKQCFVYSKEKGTFCKLSYPTKETFGYYLKSSGHGSEAKVLTATEKWGRNVFDYPQPTFQKLLKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVISIGRSSGQNGEEKSVPADMLILAGSAIVNEAILTGESTPQWKISIMGRGIEEKLSAKRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLIKGLEDPSRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLTETTELESDMSKVPVRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDEKAVPKKGNGHPVQIVQRYHFASHLKRMAVVVRIQEEFLAFVKGAPEIIQDRLIDIPPSYVETYKKYTRQGSRVLALAYKPLSDMTVSEARSLDRDMVESGLTFAGFVVFNCPIRSDSATVLSELEGSSHDLVMITGDQALTACHVASQVHIISKPILILVPASSGEGYNWVSPDETESIRYSAKEVESLSETHDLCVGGDCFEMLQQTSAHLLVIPHVKVFARVAPEQKELIMTTFKTVGRVTLMCGDGTNDVGALKQADVGVALLNALPPTQSGNSSSDLSGEEGSKSVKQKKSRPAPEASGKNVSPIGEGTSKAKVSSKSDSTSHSSVNRHQAAVDMQRQKLKKMMDELNEEGDGRAPMVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFAIHLFFLISSVKEAEKYMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSIPENKPFLYALVAAVGFFTVITSDLFRDLNDWLKLVPLPVGLRDKLLIWAFLTFLVCYSWERLLRWAFPGKIPAWKKRQRLAVSNLEKKQV* 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00905 1191 FunFam Cation-transporting ATPase 669 844 - -
Rops10g00905 1191 SUPERFAMILY HAD-like 483 835 IPR036412 -
Rops10g00905 1191 PANTHER CATION-TRANSPORTING ATPASE-RELATED 12 1168 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Rops10g00905 1191 Gene3D - 669 844 IPR023214 -
Rops10g00905 1191 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Rops10g00905 1191 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Rops10g00905 1191 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Rops10g00905 1191 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Rops10g00905 1191 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Rops10g00905 1191 NCBIfam HAD-IC family P-type ATPase 780 828 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00905 1191 NCBIfam HAD-IC family P-type ATPase 403 516 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00905 1191 Pfam E1-E2 ATPase 258 468 - -
Rops10g00905 1191 MobiDBLite consensus disorder prediction 833 848 - -
Rops10g00905 1191 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Rops10g00905 1191 Gene3D - 226 388 - -
Rops10g00905 1191 FunFam Cation-transporting ATPase 484 668 - -
Rops10g00905 1191 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Rops10g00905 1191 CDD P-type_ATPase_cation 170 1107 IPR047820 -
Rops10g00905 1191 Gene3D - 483 668 IPR023299 GO:0000166
Rops10g00905 1191 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Rops10g00905 1191 SFLD Haloacid Dehalogenase 469 955 - -
Rops10g00905 1191 Coils Coil 893 917 - -
Rops10g00905 1191 MobiDBLite consensus disorder prediction 870 899 - -
Rops10g00905 1191 SFLD p-type atpase 469 955 IPR044492 -
Rops10g00905 1191 NCBIfam P-type ATPase of unknown pump specificity (type V) 45 1149 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Rops10g00905 1191 FunFam Cation-transporting ATPase 226 388 - -
Rops10g00905 1191 MobiDBLite consensus disorder prediction 833 904 - -
Rops10g00905 1191 SUPERFAMILY Calcium ATPase, transmembrane domain M 166 1169 IPR023298 -
Rops10g00905 1191 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00905 Rops-Chr10 20122025 20135460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00905 1 1190 Primary Pumps ATPases AT5G23630 77.871 0.0 1912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00905 K14950 - gmx:100789385 2196.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00905 10 20122025 20135460 Rops10g00905 10 20122025 20135460 ECH