Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00873 ATGGATCCGGACGCTTTCACCGCCAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCAACCACCGCCACCACCCGTCCCCCGATTCTGGAATACACGGCGGCTCCGTCATCCGCCGCGGTGGCGTATCACCCTGCGAGGGCACCTAGGGAGCTGGGAGGGCTGGAGGAGCTGTTCCAAGCTTACGGCATAAGATACTACACGGCGGCGAAGATAGCGGAGCTTGGTTTCACGGTGAGCACTCTGGTGGACATGAAGGACGAAGAGTTGGACGACATGATGAACAGCCTCTCCCAGATTTTCCGTTGGGACCTTCTCGTCGGTGAGCGTTACGGCATCAAAGCCGCCGTCAGAGCCGAACGTCGACGCCTCGACGATGAGGACATGAAGCGCCGTAACCTTCTCTCCACCGACACCACCACCAACGCACTCGATGCCCTCTCTCAAGAAGGTTTATCGGAGGAACCGGTGGTGCAACGAGAGAAGGAGGCGGTGGGAAGCGGGGGAGGGAGCACGTGGGAAGAGATGAGGAAGCAGCAACAGATGAGGAGGAGGAGGACGACGAGGATGAAGACGAAGGTTCATGATGAGGAGAATGAGGAAGTTGAAGAGGATGAAGGAGAAGAGAATGATGAAGGGAACAACAACAACAATGGTGGTGGTGGTGAGAGGCAAAGAGAGCATCCATTCATTGTGACAGAGCCTGGGGAGGTTGCACGTGGCAAGAAGAATGGTCTTGATTATCTCTTTCACCTCTATGATCAATGCCGTGAGTTCTTGATCCAAGTTCAGGCCATAGCCAAAGATCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTATTTAGGTATGCAAAAAAGGCTGGTGCTAGCTATATAAACAAGCCCAAAATGCGACACTATGTGCATTGCTACGCCTTGCATTGTCTTGATGAGGAGGTGTCGAATGAACTGAGAAGGGCTTTCAAGGAGAGAGGGGAGAATGTTGGGGCGTGGAGGCAAGCATGTTACAAGCCACTTGTGGCCATTGCAGCACGTCAAGGTTGGGACATTGATGCCATATTCAATGCTCATCCTCGTCTTTCCATATGGTATGTTCCCACTAAGCTCCGTCAGCTTTGTCACGCCGAGAGGAACAGCGCCGCCGCTTCAAGCTCCGTCTCTGTTGGCAGCGCTCACCTTCCTTTCTGA 1194 0.541 MDPDAFTASLFKWDPRTVLPTTATTRPPILEYTAAPSSAAVAYHPARAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDDEDMKRRNLLSTDTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEEMRKQQQMRRRRTTRMKTKVHDEENEEVEEDEGEENDEGNNNNNGGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYDQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSVGSAHLPF* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00873 397 Gene3D Protein LEAFY 220 389 IPR038276 -
Rops10g00873 397 MobiDBLite consensus disorder prediction 135 227 - -
Rops10g00873 397 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 218 383 IPR035209 GO:0003677
Rops10g00873 397 Pfam Floricaula / Leafy protein SAM domain 51 128 IPR035079 -
Rops10g00873 397 PANTHER PROTEIN LEAFY 1 396 IPR002910 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00873 Rops-Chr10 19767759 19769804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00873 1 392 Orphan Transcription Factor Family AT5G61850 64.337 1.22e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Rops10g00873 C_LFY_FLO 7e-110 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00873 - - gmx:100798196 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00873 10 19767759 19769804 Rops10g00873 10 19767759 19769804 ECH