Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00872 ATGGAGAATAGGTCACACTCTTTTGAAGAAACGCAAAAAGAAGAGGACCATTTGTTCCCAATCTATTCAGAAAGGTCCCAGCAAGACATGTCGGCCATGGTCTCAGCACTCACGCAAGTCATTGGCGGCACCAACAATGACCAACTTCACCTACACGAAGACCCTTTAACTGCCTCTCACTCTAGCTCAACCCAGAATGAACAATCCCAACCACCACAGCAACATCAAGGGAGTGTAAGAAAAAGACACTATAGAGGGGTGAGGCAACGACCATGGGGCAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGGGTATGGCTTGGAACTTTTGAAACTGCTGAGGCTGCTGCCCTTGCTTATGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCAAAGCTCAATTTTCCTGAAAGGGTTCAAGGTACTAGCGAATTTGGGTACCTCACAAATCAGCAAGAATTTCATGTGATGTCTAGTAGTAATGATGAGCAAGCATCAAACCCGGCCCGTCCACACTTTTCTCAAGAAACATATTCTAATCCCTTTCAATATGCACAACTTATGGGTAGTGGAAGTGGCAACTTCAATAATCAGGATATGCTTCGTTTCTACGGGGGAGACATGTTTGTTTCTTCGTCTTCATCCTCATCCTCATCTTCTGGACTACCTCAGCAGCAGCAAATGCAATTTGGAGGTTCTTCTTCTTCTTCTAGTTCTCAGCCTCCTAGGAATTGGAGCGATGACATGGATGGTAGACATTGA 774 0.4561 MENRSHSFEETQKEEDHLFPIYSERSQQDMSAMVSALTQVIGGTNNDQLHLHEDPLTASHSSSTQNEQSQPPQQHQGSVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTSEFGYLTNQQEFHVMSSSNDEQASNPARPHFSQETYSNPFQYAQLMGSGSGNFNNQDMLRFYGGDMFVSSSSSSSSSSGLPQQQQMQFGGSSSSSSSQPPRNWSDDMDGRH* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00872 257 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Rops10g00872 257 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g00872 257 PANTHER DNA-BINDING DOMAIN 44 231 IPR044808 GO:0003700|GO:0009873
Rops10g00872 257 MobiDBLite consensus disorder prediction 44 77 - -
Rops10g00872 257 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Rops10g00872 257 MobiDBLite consensus disorder prediction 1 24 - -
Rops10g00872 257 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Rops10g00872 257 MobiDBLite consensus disorder prediction 214 249 - -
Rops10g00872 257 MobiDBLite consensus disorder prediction 44 88 - -
Rops10g00872 257 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Rops10g00872 257 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Rops10g00872 257 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Rops10g00872 257 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Rops10g00872 257 MobiDBLite consensus disorder prediction 214 257 - -
Rops10g00872 257 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Rops10g00872 257 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00872 Rops-Chr10 19733177 19734594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00872 17 155 AP2-EREBP Transcription Factor Family AT5G61890 65.035 2.32e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops10g00872 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00872 - - gmx:100787091 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00872 10 19733177 19734594 Rops10g00872 10 19733177 19734594 ECH
Rops8g02396 8 55482894 55484616 Rops10g00872 10 19733177 19734594 ECH
Rops2g00674 2 9588312 9591923 Rops10g00872 10 19733177 19734594 ECH
Rops10g00872 10 19733177 19734594 Rops8g02396 8 55482894 55484616 ECH
Rops2g00674 2 9588312 9591923 Rops10g00872 10 19733177 19734594 PCT