Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00867 ATGCTTTCTGAAATAATGGATCAGAGGAGTGTTTCTGCCTCATCGCACTATTTTGATGACATTTCCTATGCTTCTGAGAGGAATGTTGGATTACAGAAGCCAAAATCCATTCATGACCATTATCCACAAGGAAAGAGTGAAATGGAGGGACCTGGAAGCATTCCGAATGCTTCATCACCCCTTGAAACAAATGCAAAAACAGGCTTGCTAATGTCCCAGACTAGTCTATCTGGGGAATTTACAGAAAACCTACACTTTGGTGGAGAAGCAGGCATAATAGATATGCTGAAGGATTCCAAGGAATCATTGAATTATCGTCAAAGATCGTGGTCTGATTTGCCTAGGCAGCGAACACCTAGCTCATATGGTTTGACTGGGAACAAAATTGTCACAAATACTGCCTCACGTGAAAGTACTCTATTCTCAAGCTCGCTGTCTGATATATTTAGCCAAAAGATGAGGTTATTGGGGAAAGATGTTCTGTCAGATCAGCCCATTGCTGTTGGTTCCCTTCCCGAGGAAGAACCATATAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTCTCTGGTGTCACTGATGAGTTAGGAAGCAGTGCTCATGCTAGGACAAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAGTTGGAAGGAGATGAACACCTAGTTTCAGGAAAAAGAACCAGTTTCATGGATGGAGATCCTGGTTACTTTGGGGGTTCTAAAGGAAAAAGTCCTTTTTGTGAACAATCTTCTAGAACACTCTTTGTTAGAAACATTAATAGTAATGTAGAAGACGCTGAGCTTAAGGCTCTCTTTGAGCAATATGGAGAAATCCGAACCATTTATACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACACTATTCAATTCCAAAGGACAATGCTCCAGAGAAGGATATTAGCCATGGTACACTGATGATATCAGGTCTTGATTCATCTGTTTTGAATGATGAACTTAAACGGATCGTTGGGTTTTATGGAGAAATTAAAGAAATCTATGAGTATCCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTCCGAGGTGCAGAAGCTTCTCTTCGCGCATTGAACGGGATCTGCATTGCTGGGAAGCACATCAAGCTTGAACCTGGCCATCCTAGGATTGCAACATGTATGATGCAGCAGTCTAAAAAAGGAGAAGATGAAGCTGATCTTAGTCATAGTCTCAATGACAACTTATTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGCAGCTTGGAAAATGGATATGATCAAAGATTTCAATCTGCAACACGGCTACCATTGAATGCTTTTATTGATAACACATTCTTTCAAGTGAATTCTAGCATTCCCAAGACTGCAAGAGGGGCATCTGCTGGAAAAGTATCTGGTGTTTGTGAGTCTAGCAACGTTGTTGATGCAATGAAATTTCCATCCATTCCGAGATTTCATCCTCATTCTTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTACAATTTGTCGAGCACCATCAACATGGCTGCCAATATTGGGACTGGACCGACAGAAGTTTCTGACGGCAGGCACATTCAGGGAATAGGCTCAACTGGGAGCCTAGCAGAATTTAATACAGGAGGAAATGGGAGCCGCCCTCATCATCAACTATATCAGATGTGGAACAGCTCCAACTTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTTGTGCTCCATGTGTTCCACAGATGCCCAGCTTTCCCAGAACACCACCTCATGTGCTGAGAGCACCACATGTTGACCATCATGTTGGATCAGCACCAGTAGTTACTGCCTCACCCTGGGAAAGACAGTGTTCTTACTTGGGAGAGTCTCCTGATGCTTCTGGTTTTAGATTGGGTTCTCTTGGAAGTGCAGGTTTTCATGGTAGATGGCAGTTGCATCCTCCAGATTTTGCTTGCAACATATTTCCTCCTGTTGTTACGAATGGTACTGAATTGACATCCAACGCTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAGACTTCCCGTGACTTCAATGACAAAGTTTGATTCTACCAGTGAACGAATGAGAAACCTCTATCAACGTAGAAGTGAAGTAAACACTAACAATGCTGATAAAAAACAATATGAACTCGACCTAGGTCGCATATTGCGCGGGGAAGACAACCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAGATAATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCAGTACTTGCATATGCCCGAATTCAAGGGAAGGCTGCCCTTATTGCTCATTTCCAAAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATACTCTTCCATTCAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTACCAATATCAGAGTGAGGCCTGGAAAAGCTCGCATTAATGGTAACGACGAGAATCGTGGCCAAGGGAACCCTTCAACTTTGGCAAGTGGAGAGGAATCTGGTCATGGAATTGGACTAGACTCTTCAGTGAGTTCTTGA 2901 0.4216 MLSEIMDQRSVSASSHYFDDISYASERNVGLQKPKSIHDHYPQGKSEMEGPGSIPNASSPLETNAKTGLLMSQTSLSGEFTENLHFGGEAGIIDMLKDSKESLNYRQRSWSDLPRQRTPSSYGLTGNKIVTNTASRESTLFSSSLSDIFSQKMRLLGKDVLSDQPIAVGSLPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTDELGSSAHARTSDDFEDFDLFSSSGGMELEGDEHLVSGKRTSFMDGDPGYFGGSKGKSPFCEQSSRTLFVRNINSNVEDAELKALFEQYGEIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKDNAPEKDISHGTLMISGLDSSVLNDELKRIVGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRALNGICIAGKHIKLEPGHPRIATCMMQQSKKGEDEADLSHSLNDNLLRQKGVSSGVIASGGSLENGYDQRFQSATRLPLNAFIDNTFFQVNSSIPKTARGASAGKVSGVCESSNVVDAMKFPSIPRFHPHSLPEYRDSLANGSPYNLSSTINMAANIGTGPTEVSDGRHIQGIGSTGSLAEFNTGGNGSRPHHQLYQMWNSSNLHQQPPSNAMLWQKTPSFVNGACAPCVPQMPSFPRTPPHVLRAPHVDHHVGSAPVVTASPWERQCSYLGESPDASGFRLGSLGSAGFHGRWQLHPPDFACNIFPPVVTNGTELTSNAGQGSPKQLSHVFPGRLPVTSMTKFDSTSERMRNLYQRRSEVNTNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHSDGPNAGDPEPFPLGTNIRVRPGKARINGNDENRGQGNPSTLASGEESGHGIGLDSSVSS* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00867 966 MobiDBLite consensus disorder prediction 907 966 - -
Rops10g00867 966 Pfam RNA recognition motif 2 793 889 IPR007201 -
Rops10g00867 966 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Rops10g00867 966 CDD RRM3_MEI2_like 796 881 IPR034454 -
Rops10g00867 966 Gene3D - 257 352 IPR012677 -
Rops10g00867 966 SMART rrm1_1 355 423 IPR000504 GO:0003723
Rops10g00867 966 SMART rrm1_1 270 338 IPR000504 GO:0003723
Rops10g00867 966 SMART rrm1_1 795 873 IPR000504 GO:0003723
Rops10g00867 966 MobiDBLite consensus disorder prediction 937 951 - -
Rops10g00867 966 MobiDBLite consensus disorder prediction 29 62 - -
Rops10g00867 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Rops10g00867 966 SUPERFAMILY RNA-binding domain, RBD 267 425 IPR035979 GO:0003676
Rops10g00867 966 CDD RRM1_MEI2_like 268 344 IPR034453 -
Rops10g00867 966 PANTHER RNA RECOGNITION MOTIF-CONTAINING 120 954 - -
Rops10g00867 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Rops10g00867 966 FunFam MEI2-like protein 5 isoform 2 258 352 - -
Rops10g00867 966 FunFam Protein MEI2-like 1 353 447 - -
Rops10g00867 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Rops10g00867 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Rops10g00867 966 Gene3D - 353 450 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00867 Rops-Chr10 19681298 19691115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00867 266 420 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 2.44e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00867 - - aprc:113865455 1547.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00867 10 19681298 19691115 Rops10g00867 10 19681298 19691115 ECH
Rops2g00670 2 9514463 9523863 Rops10g00867 10 19681298 19691115 PCT