Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00864 ATGTTCCGACAACAGCTCCAATGCCTGGAAGAAAGTGCAGAATCGTTACGCTCCAGATGTTGGAAGTTCTACAAAGGATCTCGAAAATACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATCGCATTTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGCATAGTGATCCTCTATTTGTAACTTTGGGAGGACCTGTGATGACCAAATTCTCCATTGCTTTGAGAGAAATCAGTACACACAAAGAACTTCTTCGGTCTCAGGTGGAGCACATGTTGAATGACCGGTTACTAAACATTCTAAATGTCGAAATCATTGATGTCAAGGAAGCTCGGAGGCGTTTTGAGAAAGCTTCCCTTGTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATTGATATTACGACTATTGTAGAAGAGGAATTGCGCAGTGCAAGAGACTCATTTGAGGAAGCTCGTTTCAATCTGGTCGGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTCTAGAGGCTGTCACTGGAGTTATGGATGCCCATCTTCGATACTTTCAACAGGGATATCAACTATTTCATGAGCTGGAGCCTTTCATTATCGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTTACAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAACTAGTTCATCAAGAAAGTAGGTTGTCCTTGAATGGCCCTTATGGTTCCCCTAGGGGAGAAGGTGTGCATGTGCATCCATTTTCTAGGATATCAAATAAAGTGGTAGATGCAGTAACAGAATCTGCTGCAAATGGAAAGGTTCAAGTCATTAGACAAGGGTATCTTTCAAAACGTTCCTCCAATTTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTATCGTAAACCATGGAATGGGTCGCATTGCATACCATTTCAGGGTGGCAATCAACCATCTTCACAGAGGAATTGTGCCACTGAAAATAGTGCTAGTATTTTGAGTCGGTTGCTTTCTTCACATCATCCTGGAGTTGTCTATGATGAAAAATCTGTAGCACGTCATACAGTGAACTTGCTGACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGGCAGAAAATGCCCTTGACCAAATGGATTGGATGGAAAAGATCACTGGAGTAATTGCCTCCTTGTTGACTGTACAAACAATGGGAAAGTCTCTCACAGCTGACTCAGAAAGCGGTGATAGTGACTCTGCCAGCAAGACTGATTCGTTTCAAAGTTTTCCAGATGATGATTGGTCAGTGATTAGTGATTCTGCATGCAAGAACTTAACCACTAATATATCATCTGAAGACTTGCAGAAGAATAAACAGAATACAAAAATTGAAAAGCCAATTGATGTTCTTAGAAAGGTTAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCTTCTTTAAACCTTGGCATCCTCATATGCATTGAATGTTCCGGTGTTCATCGTAATCTTGGTGTACATGTATCAAAAGTAAGATCCCTGACGCTTGATGTGAAAATATGGGATTCTTCTGTCTTGACCATGTTGCAGTCACTGGGCAATCTCTTTGCAAACTCGGTTTGGGAGGAGCTGTTGCATTCAACAAGTACTTCACAAACTGATGAAACTCCTGATGGTTCATCCAAGGCAAATAGAGGCAAGTTATTTCATGCAAGAAAACCAGAACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGCTGAGAAAGTCTTTGTTCGTCGGATAACAAAAAACCACCGTCTCCTTTCAGTGGCACAACAGGTGTGTGAAAGCATCTGTGCCAATGACAAGAAAGCAGTGTACAGACATATTGTGAAATCAGATGTGGATGTCAATGCTCTTAGTAGGGAAACTTTACATGGTTTTTGTTCTGACATGCCTTCTTCAAGTAATTCAAACATATTACTTGAAAGTAAAATTCAACTAATGAAGGACATACAAGATGGTTCTGGTGTGCTTCACCTTGCATGCCTAACTAGTGATGCTGGAATGGTAGAGCTTCTCCTACAGTGTGGAGCAGATGTAAATGCTCTTGATTCAACAGGTCGGACACCACTGCATTACTGCATTATGAGAGGGAAGGATGCAGCTGCAAAAGTTCTTATTACAAGGGGGGCCAATTCACTTGCTGTTGATAAAGAAGGCAACACTCCTCTTAAGCTTGCATCAGAATCCAGCACTGTTGGCAAAGAAACTCTTGCCCTCTTAACAATCAGATGA 2397 0.4126 MFRQQLQCLEESAESLRSRCWKFYKGSRKYTEGLGEAYDGDIAFASALENFGGGHSDPLFVTLGGPVMTKFSIALREISTHKELLRSQVEHMLNDRLLNILNVEIIDVKEARRRFEKASLVYDQAREKFMSLRKSTRIDITTIVEEELRSARDSFEEARFNLVGALHNVEAKKRFEFLEAVTGVMDAHLRYFQQGYQLFHELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKLVHQESRLSLNGPYGSPRGEGVHVHPFSRISNKVVDAVTESAANGKVQVIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWNGSHCIPFQGGNQPSSQRNCATENSASILSRLLSSHHPGVVYDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKSYTLQAENALDQMDWMEKITGVIASLLTVQTMGKSLTADSESGDSDSASKTDSFQSFPDDDWSVISDSACKNLTTNISSEDLQKNKQNTKIEKPIDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHVSKVRSLTLDVKIWDSSVLTMLQSLGNLFANSVWEELLHSTSTSQTDETPDGSSKANRGKLFHARKPEHDDPISLKERFIHAKYAEKVFVRRITKNHRLLSVAQQVCESICANDKKAVYRHIVKSDVDVNALSRETLHGFCSDMPSSSNSNILLESKIQLMKDIQDGSGVLHLACLTSDAGMVELLLQCGADVNALDSTGRTPLHYCIMRGKDAAAKVLITRGANSLAVDKEGNTPLKLASESSTVGKETLALLTIR* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00864 798 ProSiteProfiles BAR domain profile. 1 226 IPR004148 GO:0005515|GO:0005737
Rops10g00864 798 PANTHER CENTAURIN/ARF 1 795 IPR045258 GO:0005096
Rops10g00864 798 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515
Rops10g00864 798 SMART ANK_2a 740 770 IPR002110 GO:0005515
Rops10g00864 798 SMART ANK_2a 707 736 IPR002110 GO:0005515
Rops10g00864 798 Pfam PH domain 285 424 IPR001849 -
Rops10g00864 798 CDD PH_ACAP 287 429 - -
Rops10g00864 798 SMART 5bar 1 208 IPR004148 GO:0005515|GO:0005737
Rops10g00864 798 ProSiteProfiles Ankyrin repeat region circular profile. 707 738 - -
Rops10g00864 798 SMART arf_gap_3 493 638 IPR001164 GO:0005096
Rops10g00864 798 SMART PH_update 285 427 IPR001849 -
Rops10g00864 798 Pfam Ankyrin repeats (3 copies) 712 785 IPR002110 GO:0005515
Rops10g00864 798 ProSiteProfiles PH domain profile. 284 425 IPR001849 -
Rops10g00864 798 Gene3D - 636 795 IPR036770 -
Rops10g00864 798 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 475 639 - -
Rops10g00864 798 Gene3D Arfaptin homology (AH) domain/BAR domain 1 239 IPR027267 -
Rops10g00864 798 Pfam BAR domain of APPL family 2 223 IPR004148 GO:0005515|GO:0005737
Rops10g00864 798 SUPERFAMILY PH domain-like 194 424 - -
Rops10g00864 798 Gene3D Arf GTPase activating protein 474 635 IPR038508 -
Rops10g00864 798 Gene3D - 277 437 IPR011993 -
Rops10g00864 798 CDD ArfGap 496 625 - -
Rops10g00864 798 Pfam Putative GTPase activating protein for Arf 496 632 IPR001164 GO:0005096
Rops10g00864 798 SUPERFAMILY Ankyrin repeat 658 784 IPR036770 -
Rops10g00864 798 ProSiteProfiles ARF GTPase-activating proteins domain profile. 493 638 IPR001164 GO:0005096
Rops10g00864 798 Coils Coil 108 128 - -
Rops10g00864 798 ProSiteProfiles Ankyrin repeat region circular profile. 740 766 - -
Rops10g00864 798 PRINTS HIV Rev interacting protein signature 505 524 IPR001164 GO:0005096
Rops10g00864 798 PRINTS HIV Rev interacting protein signature 547 568 IPR001164 GO:0005096
Rops10g00864 798 PRINTS HIV Rev interacting protein signature 524 541 IPR001164 GO:0005096
Rops10g00864 798 SUPERFAMILY BAR/IMD domain-like 1 307 IPR027267 -
Rops10g00864 798 ProSiteProfiles Ankyrin repeat profile. 707 739 IPR002110 GO:0005515
Rops10g00864 798 CDD BAR_SFC_plant 5 205 IPR035670 -
Rops10g00864 798 SUPERFAMILY ArfGap/RecO-like zinc finger 493 633 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00864 Rops-Chr10 19614949 19624036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00864 503 635 C2H2 Transcription Factor Family AT4G21160 41.606 2.84e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00864 K12489 - gmx:100797073 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00864 10 19614949 19624036 Rops10g00864 10 19614949 19624036 ECH
Rops2g00661 2 9401478 9412534 Rops10g00864 10 19614949 19624036 PCT