Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00862 ATGGCGTCATCAGATGTTACGATGAAAGGGAATTGTTTGAACCACAACGATGGTGGTAGGAGCGGTGCTACTGAGGGTCAAAATGGTCATTCTCCTCCCACTGCGAGAGACGCGGAAACTGCGCTTTTCAGGGAGCTATGGCATGCTTGTGCTGGTCCTCTTGTAACGGTGCCAAGAGAAGGAGAACGAGTCTTTTATTTCCCTCAGGGACATATTGAGCAGGTGGAGGCGTCGACGAATCAGGTGGCGGACCAACATATGCCTGTGTACGATCTTCCATCTAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCGGAGCCAGATACAGACGAGGTTTTTGCTCAGGTGACCTTGCTTCCAGAGCCAAATCAAGATGAGAATGCTGTGGAGAAAGAGCCTCCGCCACCTCCTCCACCGCGATTTCACGTGCATTCTTTCTGTAAAACTCTCACTGCCTCCGATACCAGTACCCATGGTGGGTTTTCTGTGCTGAGACGCCATGCAGATGAATGCCTTCCACCGCTGGACATGTCAAAACAGCCACCTACCCAGGAATTGGTGGCTAAGGATTTGCACGGGAATGAGTGGCGTTTTAGACATATCTTTCGTGGTCAACCCCGTAGACACTTACTTCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAAAGGCTTGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGCACTTCGTGTTGGTGTCAGGAGAGCAATGAGACAGCAGGGTATTGTTCCATCCTCGGTTATCTCGAGCCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACTGGGACCATATTCACAGTTTATTACAAGCCTAGGACCAGTCCTGCTGAATTTATCATTCCATTTGATCAATATATGGAGTCCCTTAAAAATAATTATACCATAGGGATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCGGAGCAGAGGTTTACTGGTACTATTGTTGGAATAGAGGATGCTGACACCAAAAGGTGGAGAGACTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACACCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCGGCTCTGAATCATCTTTCAACGCCCAGGCCCAAAAGGCCTCGCTCTAATGCTGTTCCATCATCCCCGGACTCTTCTGTTCTTACTCGAGAAGCATCATCTAAAGTAGGTGTAGACCCTTTACCAGCAAATGGATTTCCAAGAGTCTTGCAAGGTCAAGAATTCTCGACCTTAAGAGGCAATTTTGCAGAAAGCAATGAGTCTGATACTGCTGAGAAGTCTGTTGTTTGGCCACCTGCAGTAGATGATGAAAAGATTGATGTTGTTTCTACTTCAAGGAGGTATGGGTCAGAGAGCTGGATGTCAATGGGGAGGAATGAACCTACATATTCAGATCTTCTTTCAGGCTTTGGGGCCAGTGGAGATCCTTCTCATCCATCCATGGTTGATCAAATGACCACCCCTGGAGCTTATCCTGCTAGAAAGCATTCGTTGGATCATGAAGGCAAACTTCACATGCATAATCCGTGGTTGGTAATCCCCTCTAGTCTATCACTAAACCGCTTGGACTCCAACACAAAAGGTTCTGCACATGGTGGTGATACAGCTTACCAAGCTCGAGGGAACTTGAGATACAGTGCATTTGGCGAATACCCTTCGCTTCATGGTCATAAACTTGAGCATGGACACTTGATGCCCCCGCCACCCCCAACTCAATATCAGAGTCCTCGTTCAAGAGAGCTCATGTTGAAACCAATGTCATCCAAAACTTGTGAGACTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTTTCAGTAGCCCAGTTGGACCAGAGCCTTGTGTATCTCAGAGAAATGTGACTAGTGAGCCAGCTGGTGTGATGCATCTTACACCACACCAACAAGAAGCTTCTGAAAAGGATCAGAAGTCAGATCACTCAAAGGGCTCAAATCCAGCGGATGGCCAAGTTGTTGATGACCATGAAAAGCCATTGCAAACTTCTCAGCAGCATCTGAAAGATGTCCAAGCCAAACCGCACAGTGGTTCAGCCAGGAGTTGCACTAAAGTTCATAAGAAAGGGATTGCGCTTGGCAGGTCAGTGGACCTTACAAAGTACAGTAACTATGATGAATTAGTTGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTAATGTCAACGAAGAAGGATTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGGAAAATTTATATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCAGAAGTTAAATTCAGACAATGGCTCGGATGCCCGATAATTTGTAGATCGATTTCGATAGCTTCAGATTCCGGGCTGGAAACTAGGAAGCTTCATAAAGTCATCGAGGCAAAGAACATGACTTGA 2547 0.4668 MASSDVTMKGNCLNHNDGGRSGATEGQNGHSPPTARDAETALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGALRVGVRRAMRQQGIVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIIPFDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWRDSKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNHLSTPRPKRPRSNAVPSSPDSSVLTREASSKVGVDPLPANGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPAVDDEKIDVVSTSRRYGSESWMSMGRNEPTYSDLLSGFGASGDPSHPSMVDQMTTPGAYPARKHSLDHEGKLHMHNPWLVIPSSLSLNRLDSNTKGSAHGGDTAYQARGNLRYSAFGEYPSLHGHKLEHGHLMPPPPPTQYQSPRSRELMLKPMSSKTCETVKPKDGDCKLFGISLFSSPVGPEPCVSQRNVTSEPAGVMHLTPHQQEASEKDQKSDHSKGSNPADGQVVDDHEKPLQTSQQHLKDVQAKPHSGSARSCTKVHKKGIALGRSVDLTKYSNYDELVAELDQLFEFGGELMSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPEVKFRQWLGCPIICRSISIASDSGLETRKLHKVIEAKNMT* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00862 848 ProSiteProfiles PB1 domain profile. 718 811 IPR000270 GO:0005515
Rops10g00862 848 Gene3D - 714 807 - -
Rops10g00862 848 MobiDBLite consensus disorder prediction 382 427 - -
Rops10g00862 848 MobiDBLite consensus disorder prediction 392 414 - -
Rops10g00862 848 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Rops10g00862 848 CDD B3_DNA 146 248 IPR003340 GO:0003677
Rops10g00862 848 Gene3D - 145 250 IPR015300 -
Rops10g00862 848 MobiDBLite consensus disorder prediction 665 720 - -
Rops10g00862 848 SMART B3_2 148 250 IPR003340 GO:0003677
Rops10g00862 848 Pfam AUX/IAA family 701 806 IPR033389 -
Rops10g00862 848 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Rops10g00862 848 Gene3D - 311 381 - -
Rops10g00862 848 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 807 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops10g00862 848 MobiDBLite consensus disorder prediction 667 681 - -
Rops10g00862 848 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops10g00862 848 FunFam Auxin response factor 311 383 - -
Rops10g00862 848 MobiDBLite consensus disorder prediction 17 34 - -
Rops10g00862 848 SUPERFAMILY CAD & PB1 domains 721 795 - -
Rops10g00862 848 SUPERFAMILY DNA-binding pseudobarrel domain 144 277 IPR015300 -
Rops10g00862 848 MobiDBLite consensus disorder prediction 1 35 - -
Rops10g00862 848 FunFam Auxin response factor 146 250 - -
Rops10g00862 848 FunFam Auxin response factor 713 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00862 Rops-Chr10 19584494 19588984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00862 1 808 B3 DNA Binding Superfamily AT5G62000 65.796 0.0 1066
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops10g00862 AUX_IAA 1.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00862 - - gmx:100803498 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00862 10 19584494 19588984 Rops10g00862 10 19584494 19588984 ECH
Rops2g00659 2 9344533 9349067 Rops10g00862 10 19584494 19588984 PCT
Rops10g00862 10 19584494 19588984 Rops2g04135 2 75063114 75065699 PCT