Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00860 ATGATGTCCAGAATAAACAACAGTGCTTGGATGGAGGAAAGAGAAGATGAAAACTCAAAACCAAACACTCCTGGTGCTGCTGGTTTTGTTGAAAATAGAGAGGATTTGGGTTCTGTTTGTGCTTTGAAGCCCATGCTTGAAATGGAAGAGGAATGGTACATGAGGGACATGGCTTTTGATAATGTTTTGCTCTCTTCTTCTTCATGTTCTCCCTCTTCCTCTCTCTTCAACAACAACCTTGACCCTTCATCATCTCAAGTGCAGTACTTTCTCCCTCCAACAAACCCAAAACCTCCAACTTTGTCTTCTCTTCTCAACCCTTTTGACATGGCTTGTGAGGTTGGGTTCCTTGATCCTCAAGCTTCCACTGCTTCTTCCTTACTTGGTGGCTTTGTTGACTTGAGCTCAAAAACCCAGTTGGCCACCACAAGTGTACCTCAGTTGCTACAAAGCCACACCACCTTTGGAGGGTTCCAGAACTTGGAGGATTGTTCTGGAAAGCCTCTATTTTTGAGACCCCTTGAATCTTTGCCTCCTTCTGGAGCACAACCCACTTTGTTTCAGAAGAGAGCAGCACTTAGAAAAAACATGGGATCGGAAAGTAGGGGAAAGTGTGAAGTTGGGGGTGAAGGGAGTGACAAGAAAAGGAAGATGAGCAGTGGGGAGGAAGTTGAAGATGCAAGTTTTGATGGGTCAGGGTTGAACTATGATTCTGATGATTTGACTGAGAGTAACAATAATAATAAGATGGAAGAGAATAGTGCTAAGAATGGTGGAAACACTTCCAATGGCAACAATAGCACCGTCACTGGTGTTGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTCAATGATAGACTCTATATGTTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTATCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAATGAGTTGGAGTCAGCACCTGGTGGATCTTCACTCACTCCTGCATCAAGCTTTCATCCTTTGACCCCTACTCCACCTGCACTGCCAAGCCGAATTAAAGAAGAACTATGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGTGAAGGAAGGGCTGTAAATATCCACATGTTTTGTGCACGCAAGCCTGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGATTTGCTATGGATATTTTTCGAGCTGAGCAATGCAAAGAAGGTCAGGATGTCCATCCAGAGCAAATCAAAGCAGTGCTCTTGGATTCAGCTGGCTACCATGGCTTGATCTAA 1416 0.4499 MMSRINNSAWMEEREDENSKPNTPGAAGFVENREDLGSVCALKPMLEMEEEWYMRDMAFDNVLLSSSSCSPSSSLFNNNLDPSSSQVQYFLPPTNPKPPTLSSLLNPFDMACEVGFLDPQASTASSLLGGFVDLSSKTQLATTSVPQLLQSHTTFGGFQNLEDCSGKPLFLRPLESLPPSGAQPTLFQKRAALRKNMGSESRGKCEVGGEGSDKKRKMSSGEEVEDASFDGSGLNYDSDDLTESNNNNKMEENSAKNGGNTSNGNNSTVTGVDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESAPGGSSLTPASSFHPLTPTPPALPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYHGLI* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00860 471 CDD ACT_UUR-ACR-like 400 460 - -
Rops10g00860 471 Gene3D - 273 343 IPR036638 GO:0046983
Rops10g00860 471 MobiDBLite consensus disorder prediction 195 224 - -
Rops10g00860 471 MobiDBLite consensus disorder prediction 195 293 - -
Rops10g00860 471 MobiDBLite consensus disorder prediction 277 293 - -
Rops10g00860 471 CDD bHLH_AtAMS_like 283 348 - -
Rops10g00860 471 MobiDBLite consensus disorder prediction 341 385 - -
Rops10g00860 471 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 346 IPR036638 GO:0046983
Rops10g00860 471 SMART finulus 286 335 IPR011598 GO:0046983
Rops10g00860 471 MobiDBLite consensus disorder prediction 341 355 - -
Rops10g00860 471 FunFam BHLH transcription factor 276 344 - -
Rops10g00860 471 MobiDBLite consensus disorder prediction 235 273 - -
Rops10g00860 471 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Rops10g00860 471 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 159 467 - -
Rops10g00860 471 MobiDBLite consensus disorder prediction 1 30 - -
Rops10g00860 471 Pfam Helix-loop-helix DNA-binding domain 287 329 IPR011598 GO:0046983
Rops10g00860 471 Coils Coil 319 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00860 Rops-Chr10 19579753 19582259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00860 80 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.937 2.48e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g00860 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00860 - - gmx:100217341 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04263 2 77710191 77711961 Rops10g00860 10 19579753 19582259 ECH
Rops10g00860 10 19579753 19582259 Rops10g00860 10 19579753 19582259 ECH