Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00851 ATGGCTGATTTTTCATACCAATACCATCCTTTACTTCTTGACTCAGCATTCTTGCTCAACATAAACACTGGTCCTCCTCCTACTCAGTTTCACCATACTCAGGAAACATCTTTTAATCAAGATACCAGCTGTGTTGATCAAAGCTCCAAGATTACCATCAGTGGTAATGAACCTTCTGTCACCAAAAACCATAGTCCTCAGTCTTCCATGGTAGTGGACAAGCTTGAAACTGGTGAACAAGTCACTCAGAAGGTGACTCCTAAGAGGAGAACCAGAAATGGAACTTCCTTGAGTAACCCACAATCCAAGGATGAAGGGAGAAACAAGAAACAGAAGAAGAGCAATGGTGGGGTGAAGGAAGAGGAAAAACCAAAAGCAGAGAAGAAGGATCAGAGAAAATGTCTAGAAGAGCCCCCAACAGACTATATCCACGTCAGAGCAAGAAGGGGTCAGGCCACTGATAGCCACAGCCTTGCCGAAAGGGTGAGAAGGGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAGAGACTTGTGCCAGGCTGTGATAAGGTGATCGGAAAGGCCCTTATGTTGGATGAAATAATCAATTACGTTGAGTCTTTACAGAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCTTCTGTGCATCCCATGTTTTATGACTTGGCAACGGACATAGACACCCTCTTGGTTAGACCAGAGAAAATAAATAGCTTGGCATCACCATCACCACTAGCATCTGGGTCACATTCAAACAGCCCCAACCAAGCTACAACTTTTGCTGATACAACCACCATGACACCCACCACCATCTTCCACACTGCTAGTGACTACCTTTTGGATAGTTCAGCTTCATTTTTTCTTCAAGGGCAAAGGTCAAATGTCATCTCTGAGGATAGTGGTAGTCATTTCTGGGACGCAGAAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCAGCAATAACTAA 972 0.4352 MADFSYQYHPLLLDSAFLLNINTGPPPTQFHHTQETSFNQDTSCVDQSSKITISGNEPSVTKNHSPQSSMVVDKLETGEQVTQKVTPKRRTRNGTSLSNPQSKDEGRNKKQKKSNGGVKEEEKPKAEKKDQRKCLEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMKKLQRLVPGCDKVIGKALMLDEIINYVESLQNQVEFLSMKLASVHPMFYDLATDIDTLLVRPEKINSLASPSPLASGSHSNSPNQATTFADTTTMTPTTIFHTASDYLLDSSASFFLQGQRSNVISEDSGSHFWDAEDQRQKFLHPYGFSNN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00851 323 MobiDBLite consensus disorder prediction 103 140 - -
Rops10g00851 323 FunFam Basic helix-loop-helix transcription factor 148 220 - -
Rops10g00851 323 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 33 255 IPR024097 GO:0006355
Rops10g00851 323 MobiDBLite consensus disorder prediction 240 259 - -
Rops10g00851 323 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Rops10g00851 323 MobiDBLite consensus disorder prediction 47 102 - -
Rops10g00851 323 SMART finulus 157 207 IPR011598 GO:0046983
Rops10g00851 323 MobiDBLite consensus disorder prediction 47 140 - -
Rops10g00851 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Rops10g00851 323 CDD bHLH_AtBPE_like 141 226 - -
Rops10g00851 323 Gene3D - 148 220 IPR036638 GO:0046983
Rops10g00851 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00851 Rops-Chr10 19456571 19459057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00851 107 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 67.969 1.58e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g00851 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00851 - - gmx:100806696 471.855