Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00849 ATGAGAGAATCACCGGAAGAATCAGATCCAATCTCCGTTTGCCTCCATTTTCTCTCTTCCCTTCTCGACCATGAAATCCCCACCGTCCAAAACTTCAAAGGAAAATGGTCACTGGCCCGAGTCAAACTCACTCACCTCCAAACCCACCTCTCCGATTTCTCCACCGAGTTCCCCAAATCCTCAACCTCAAACCCTCTCTCCCTCGATCTCATTCACTCCCTCTCCCACACCCTAAACGACGCCATCTCCCTCGCACGACAATGCCACTCTCCGAACCTGCCACGTGGCAAGCTCCAAACCCAAAGCGATCTCGACTCCCTCCTCGCCACCCTCGACCGCCACGTCACCGACTGCGACATCCTCTTCCGTAGCGGCGTCCTCCTCGAAACCACCCACCCCGTTACGTCCAAACGAGACGCCGTTAGATCCGATTCCAGAAACTTCATTACCCGTTTGCAAATCGGGTCACCCGAGTCACGTGCCTTAGCAATGGACTCTCTTCTCGCTTTGCTCCACGAAGATGACAAAAACGTTACAATAGCAGTGGCGCAGGGTTGTGTTCCCGTGCTCGTGCGCTTACTCGATTCCTCCTCGGAGTTCAAGGAGAAAACAATCGCCGCCATTTCCAGAATCTCCGCCGTGGAAAGCGGAAAGAACGTGCTGATTGCTGAAGGTTTGTTGTTACTGAATCACTTGGTTAGGGTTTTGGATTCTGGGAGTGGTTTCGCCATTGAAAAAGCTTGCATCGCGCTTCAGAATCTGAGTTTTACCAAGGATAGTGCTAGGGCTATTGGATCAAGAGGTGGAATCTCTTCGCTTTTGGGGATTTGCCAGGCTGGCACGCCGGTTTCGCAGGCTTCCGCGGCGGCGGTTTTGAGGAACCTCGCCGGATTTGGTGAAATAAAAGAGAATTTCGTGGAGGAGAATGCGGTTGTTGTTCTTCTGGGGCTGGCTTCTTCAGGAACTGCTTTGGCTAAAGAAAATGCGATTGGGTGTTTGTGTAATTTGATATCTGAGGATGAAAGTTTGAGGCTTTTGATGGTTAAGGAAGGTGGGGTGGAGTGTTTGATGAATTTCTGGGACTCGGGTATTGCAATTCAGAGCCTTGAGGTTGCTGTTGAGGTTTTGAGACACTTGGGTTTGAGTGGTCCAATCGCTGAGGTTCTTGTTGGTGAAGGATTTACTGGGAGGGTGATTGGATTGTTGAATTGTGATGTTCTGGCTGTTAGAATTTCAGCTGCTAAAGCTGTTTATGCTTTGGGGTTGAACTGTGGGAAGATTAGGAAGGGAATGGGAGAAATGGGGTGTGTTTCTTCTCTGATTAAGATGTTAGATGGGAAGGGTGTGGAAGAGAAAGAAGCAGCTTCAATGGCTTTGTCGGTGCTCCTTCTTCATCCCTTTAATAGAAGACTTTTTCGTAAGGATGAGAGGGGATTAGTGAGTACGGTTCATTTATTGAACCCTTCGTTGCATAATTTGGATAAGAAGTACCCTGTTTCATTGCTCCTTTTGCTTTTGCATTCCAAGAGTTGTAGGAAGCAAATGGTGGCTGCAGGGGCTTGTGTACATGCACAGAAGCTTGTTCAGATGGATGTTCCGGGGTCTAAGAAACTCTTGGAGAGCCTTGGTCCTGGTAAGATTTGGGGAGTTTTTGCGAGACCCTAG 1665 0.4907 MRESPEESDPISVCLHFLSSLLDHEIPTVQNFKGKWSLARVKLTHLQTHLSDFSTEFPKSSTSNPLSLDLIHSLSHTLNDAISLARQCHSPNLPRGKLQTQSDLDSLLATLDRHVTDCDILFRSGVLLETTHPVTSKRDAVRSDSRNFITRLQIGSPESRALAMDSLLALLHEDDKNVTIAVAQGCVPVLVRLLDSSSEFKEKTIAAISRISAVESGKNVLIAEGLLLLNHLVRVLDSGSGFAIEKACIALQNLSFTKDSARAIGSRGGISSLLGICQAGTPVSQASAAAVLRNLAGFGEIKENFVEENAVVVLLGLASSGTALAKENAIGCLCNLISEDESLRLLMVKEGGVECLMNFWDSGIAIQSLEVAVEVLRHLGLSGPIAEVLVGEGFTGRVIGLLNCDVLAVRISAAKAVYALGLNCGKIRKGMGEMGCVSSLIKMLDGKGVEEKEAASMALSVLLLHPFNRRLFRKDERGLVSTVHLLNPSLHNLDKKYPVSLLLLLLHSKSCRKQMVAAGACVHAQKLVQMDVPGSKKLLESLGPGKIWGVFARP* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00849 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 226 IPR000225 GO:0005515
Rops10g00849 554 SUPERFAMILY ARM repeat 148 492 IPR016024 -
Rops10g00849 554 Gene3D - 365 541 IPR011989 -
Rops10g00849 554 SMART arm_5 257 297 IPR000225 GO:0005515
Rops10g00849 554 SMART arm_5 174 213 IPR000225 GO:0005515
Rops10g00849 554 SMART arm_5 298 338 IPR000225 GO:0005515
Rops10g00849 554 SMART arm_5 340 381 IPR000225 GO:0005515
Rops10g00849 554 SMART arm_5 424 464 IPR000225 GO:0005515
Rops10g00849 554 Gene3D - 136 363 IPR011989 -
Rops10g00849 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00849 Rops-Chr10 19368302 19370211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00849 136 401 U-box Gene Family AT2G23140 26.022 2.30e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00849 - - gmx:100807228 790.801