Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00847 ATGGGTTGTGTGCTTGGGACGCCAGCGGATGCCGGAGCTCAGCGTCGTCGCCGGAGTAACAAGCGTAACGATGGTTCCGGTGGAGGTGATAATGTAGTTAGGGTTCGGGAGAGGCAGACGAACCGGCACACCGGCGATTTTCCGGGGACACTTCCGGCGCCGGAGCGCCGGAGACCTAGGCTTGATCCATGCGCGGTGAATCAACAGGGTTGGCCGTCGTGGTTGATGGCCGTCGCTGGTGAAGCAATCGGCGATTGGACTCCTCGTCGTGCCAACTCGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAGGCTAGAGACCTTCTTACTGGAAAGATTGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGAGAGATAATTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTAAAGCTTGAAGGATTGGTTACTTCTAGAATGTCATGCAGTCTTTACTTGGTTTTTGAGTATATGGAACATGATCTTGCTGGGCTTGCAGCTGGCCAAGGTGTTAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCGAGGTGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAGTCCTTAAAATTGCAGATTTTGGACTGGCGACTTTCTTTGATCCTAAGCTAAAGCAGTCAATGACAAGCAGAGTTGTGACCCTTTGGTATCGTCCCCCTGAGCTTCTTCTTGGGGCTACCATTTATGGTATAGGTATAGACCTTTGGAGTGCTGGTTGCATATTGGCAGAGCTGCTGGCTGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAGTTGTGTGGATCTCCATCTGAGGAATATTGGAGGAAGTATAGATTGCCTAATGCTACAATCTTTAAGCCTCAGCAGCCATATAGACGATGTATCTTAGAAACATTCAAGGATTTTCCTCCATCTTCACTACCTCTAATTGAAACTCTTCTTGCAATAGATCCCGATGATCGTGGCACTGCATCTGCTGCTCTAAATAGTGAATTCTTTACCACTGAGCCCTATGCTTGTGAACCATCGAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAAGCTCTAAATGGAAAAGCTAATGCAGTTGACAGTGCCAAGAGAGTCAGAGCACGTGAGCGTGGTCGGGCCATTCCAGCCCCTGAAGCCAATGCAGAGATTCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTCCCACCTCCTCATCAAGATGGAGCTGTTGGATATCCACAGGATGCATCAAATAAAGGTCCTGTTTCATTTGGAGCCCCCGACACTTCCTTTGGTTCAGGGATATTCAATATAAAACAATCTGGACCTGTTAGAAATCATGCTGCTTCAGGACTTAACAGAGGGAAGAAAACTAAAAAAGAAGATTCCCAGATGGCATCTTCGTGGAAATTTATGCGTCCATTTAGGCCATCAACAGTTGGACTTTCAATGGATTTATTATTTAGGAGCAAATAA 1674 0.4564 MGCVLGTPADAGAQRRRRSNKRNDGSGGGDNVVRVRERQTNRHTGDFPGTLPAPERRRPRLDPCAVNQQGWPSWLMAVAGEAIGDWTPRRANSFEKLAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREIIVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGVLKIADFGLATFFDPKLKQSMTSRVVTLWYRPPELLLGATIYGIGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYRLPNATIFKPQQPYRRCILETFKDFPPSSLPLIETLLAIDPDDRGTASAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKANAVDSAKRVRARERGRAIPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDASNKGPVSFGAPDTSFGSGIFNIKQSGPVRNHAASGLNRGKKTKKEDSQMASSWKFMRPFRPSTVGLSMDLLFRSK* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00847 557 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Rops10g00847 557 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00847 557 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Rops10g00847 557 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Rops10g00847 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Rops10g00847 557 MobiDBLite consensus disorder prediction 1 59 - -
Rops10g00847 557 MobiDBLite consensus disorder prediction 499 513 - -
Rops10g00847 557 CDD STKc_CDK9_like 94 378 - -
Rops10g00847 557 FunFam probable serine/threonine-protein kinase At1g54610 177 418 - -
Rops10g00847 557 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Rops10g00847 557 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00847 557 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Rops10g00847 557 MobiDBLite consensus disorder prediction 460 530 - -
Rops10g00847 557 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00847 557 PANTHER CELL DIVISION PROTEIN KINASE 92 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00847 Rops-Chr10 19351233 19355622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00847 86 412 Core Cell Cycle Gene Families AT5G10270 51.143 2.64e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops10g00847 Pkinase 1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00847 K08819 - gmx:100793033 1050.43