Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00845 ATGGAAAAAGTTAATTTTATTAAGAATGGAGTGAGCAGATTGCCTCCTGGTTTTCGTTTCCAGCCAACAGATGAAGAACTTGTCTTTCAGTATTTAAAATGTAAGATTTCATCTTGCCAGTTGCCTGCTTCAATCATTCCTGAAATCAATGTCTGCAACTATGATCCTTGGGATTTGCCAGGAAATTTTGATCAGCAAGAGAGGTACTTCTTCAGCTCCAAGGAAGCCAAATATCGTAACGGCAATCGCATGAACCGAACAACCAACTCTGGCTATTGGAAGGCAACAGGATCTGACAAAAAAATTTCATCGTCAGTAAGTAATGGTATTGCGGGGCTAAGAAAAACTCTAGTATTTTATGAAGGCAAATCTCCCAATGGGTCTCGAACTGATTGGGTCATGTATGAATATCGCCTAGTCAGCGCAGAAACTACTGCTTGCAATTCATACCAGAGCTATGTAAATGAGATAGGGGATTGGGTTCTTTGTCGCGTGTTCATGAAGGAAAGAAGAATAGAAAGTGATGACAACAAAGCTCGCATGGTGAAGAACAAGACAGTGATGAATGTCCGGGTAGCTCAGCCAAGATTATTCTTTGATTTTATGAGGGTACACCAGTCAGAGCCGGTTTCTACATCCTCATCTTGTTCAAATTCCAGTGTCCTTAAAGAGACAGACCATGAAGAAACAAGTGGCTATGCTGATTTTTAA 711 0.4065 MEKVNFIKNGVSRLPPGFRFQPTDEELVFQYLKCKISSCQLPASIIPEINVCNYDPWDLPGNFDQQERYFFSSKEAKYRNGNRMNRTTNSGYWKATGSDKKISSSVSNGIAGLRKTLVFYEGKSPNGSRTDWVMYEYRLVSAETTACNSYQSYVNEIGDWVLCRVFMKERRIESDDNKARMVKNKTVMNVRVAQPRLFFDFMRVHQSEPVSTSSSCSNSSVLKETDHEETSGYADF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00845 236 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Rops10g00845 236 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Rops10g00845 236 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 211 - -
Rops10g00845 236 MobiDBLite consensus disorder prediction 209 236 - -
Rops10g00845 236 Gene3D NAC domain 23 173 IPR036093 GO:0003677|GO:0006355
Rops10g00845 236 MobiDBLite consensus disorder prediction 222 236 - -
Rops10g00845 236 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00845 Rops-Chr10 19327326 19329988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00845 1 170 NAC Transcription Factor Family AT5G13180 62.941 2.88e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g00845 NAM 4.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00845 - - aprc:113868555 358.607