Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00836 ATGGATGTCTCTAAGATTGAAATTAATGTAAAGATAGGAGAACCAGTTCAAGTTCAGCCAGCAGAGGAAACAGAAAAGGGACTTTACTTCCTTTCAAACCTTGACCAGAATATTGCAGTTCCAGTTCGAACGGTTTATTGCTTTAAATCTGCTTCCAGAGGGAACGAGGATGCTGCACAAGTTTTAAAGGATGCCTTGTCAAAGATTCTTGTCCCTTATTACCCTATGGCTGGCAGGTTGATTATCAGCTCAGAAGGGAAGTTGATTGTGGATAACACAGGGGATGGTGCAGTGTTTGTTGAGGCTGAAGCAAATTGTAACATAGAAGACTTAGGAGACTTGACAAAGCCAGACCCTGATACTCTTGGGCAATTGGTTTATAACATCCCTGGTGCTCAGACCATATTTGAGATGACTCTTATGACAGTCCAGGTGACAAAGTTCAAATGCGGAGGATTTACTTTGGGGCTAAACATGAACCATAGTATGAAAGATGGACTATGTGCCATGGAGTTTGTGAATGCATGGAGTGAGACAGCCCGAGGTTTGAACTTAAAGATCCCACCATTCCTTGATAGAACAATACTCAAAGCACGTAACCCTCCCAAAATAGAGTTCCAACACCATGAATTTGCTGAAATCAAAGATATAACAAATACCAAAATACTTTACGAAGAAGAAAAGATTGTCTACAGATCCTTCTGTTTCGATCCTAAGAAGCTTGAGCTGCTTAAGAAAAAAGCCACTGAAGATGGCGTTTTGGAGAAGTGCACAACTTTTGAAGCACTCTCAGCTTTTGTATGGAGATCTAGAACTGAAGCCTTAAAGATGCATCCTGATCAGCAAACAAAGCTACTCTTTGCAGTTGATGGAAGGTCTAGATTTGTGCCTCCAATACCAGAGGGTTACTTTGGCAATGCTTTTTTGCTGACAAATTCACTGTGTAAGGCAAGTGAGCTATTGAAGAACCCTTTTTCATTTACAGTGGGATTGATTCATAAGGCAATTGACATGGTCACAGATGGTTATATGAGATCTGCTATTGACTATTTTGAAGTCACAAGAGCTAGGCCTTCTTTAACAGCAACCCTTTTGATCACAGCTTGGACCAGGTTATCTTTCCACACTACAGATTTTGGTTGGGGAGAACCTTTATGTTCTGGTCCTGTCACCTTGCCAGAGAAAGAAGTCATTTTGTTCTTATCACATGGTAAAGAAAGGAAAAACATAAATGTGCTTCTGGGTTTGCCTGCTTCTGCCATGGAAATTTTTGAAGCATTGATGATGCAGGTGTGA 1296 0.4082 MDVSKIEINVKIGEPVQVQPAEETEKGLYFLSNLDQNIAVPVRTVYCFKSASRGNEDAAQVLKDALSKILVPYYPMAGRLIISSEGKLIVDNTGDGAVFVEAEANCNIEDLGDLTKPDPDTLGQLVYNIPGAQTIFEMTLMTVQVTKFKCGGFTLGLNMNHSMKDGLCAMEFVNAWSETARGLNLKIPPFLDRTILKARNPPKIEFQHHEFAEIKDITNTKILYEEEKIVYRSFCFDPKKLELLKKKATEDGVLEKCTTFEALSAFVWRSRTEALKMHPDQQTKLLFAVDGRSRFVPPIPEGYFGNAFLLTNSLCKASELLKNPFSFTVGLIHKAIDMVTDGYMRSAIDYFEVTRARPSLTATLLITAWTRLSFHTTDFGWGEPLCSGPVTLPEKEVILFLSHGKERKNINVLLGLPASAMEIFEALMMQV* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00836 431 Gene3D - 215 431 IPR023213 -
Rops10g00836 431 FunFam Spermidine hydroxycinnamoyl transferase 8 211 - -
Rops10g00836 431 Pfam Transferase family 11 426 - -
Rops10g00836 431 FunFam Tryptamine hydroxycinnamoyl transferase 215 429 - -
Rops10g00836 431 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 18 426 - -
Rops10g00836 431 Gene3D - 4 213 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00836 Rops-Chr10 19176687 19179548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00836 8 431 Monolignol Biosynthesis Gene Families AT5G48930 36.364 8.35e-92 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00836 K15400 - gmx:100794490 729.939