Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00831 ATGGTTTATACTGTGTCTTGCATTTTGTCTTCTTCTCAGAGAAAGAGTCGGAAGGTGTCATTTTCTCAGTTTTGTCGTCGCACACGTAAACGTTTGGCTTTAAGTATTCAGAAACCAGGACCCACAAACACAAGAGACAAAGTTCAATTCAACCCCACCATTAACCTTAAACTGAATCTCATTCTTGTTCAGTTTGTGTACGACCAAGCTAGGGGATTGTATTACTGGGAAAACATGAAGTTCTGCAAAAAATATCAAAAGTACATGCAAGGCCAGGAGAAGAATCTTCCGGAGTTAGGCTTCAAGAAGCTCAAGATGACCATGAAGAAGTGCAAGAGAGATTGTGCAGCATTCCAGAAAGGCCTTAATGCATCTCTTGGCTTCGAAACCTACCCTCACCATTGCCCATGTGATGAAAAAGTGTGTTTAGTGTGTGATGGGACCTTCTTCCCTTCACTTCTCAATGAAATGTCAGCGATAGTAGACTACTTTAATCAGCGTGCGAAGAAATTGCTGGAGGTTCATCTCGCTTCTGGCTTCAGAAAGTACATTTTTTGGTTCAAAGGCAAATTACAAGGGAACCATACTGCTCTAATTCAAGAAAGCAAAGATCTGGTTGCTTATGCACTCATAAATGTCATTGCAATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGCCAATTATTCAAGTCGCAGATCCAGATTATGCACAAAGAAATATTTCAAAAGCCCTTGCTTTGCGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAAGTCATGTCAAGGGAGGCATCTGCTTTGTTCGATGATTGCTTTCTCACCTTTAAAGATGGAAAACCATCACTTACTTTTGAGCTCTTTGATTCTATGAAAATTGATATTGACTTGACTTGTCCAGTATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGGCTTGTGGACATATATTCTGCTATATTTGTGCCAACTCAGCTGCATCAGTATCTATTGTTGATGGACTTAAGGCAGCAGATCCTAAAGAGAAATGTCCTCTATGTCGAGAGGTTGCAGTTTATAAAGGTGCTGTACACTTGGAAGAACTAAATATTCTGTTGAGCCGAAGCTGTCCTGAATACTGGGAGCAAAGGCTTCAGACAGAGAGGGTAGAGAGGATGAAGCAAATAAAGGAACACTGGGAATCACGTTGTAGGGCATTCGTGGGGGTCTAA 1233 0.4055 MVYTVSCILSSSQRKSRKVSFSQFCRRTRKRLALSIQKPGPTNTRDKVQFNPTINLKLNLILVQFVYDQARGLYYWENMKFCKKYQKYMQGQEKNLPELGFKKLKMTMKKCKRDCAAFQKGLNASLGFETYPHHCPCDEKVCLVCDGTFFPSLLNEMSAIVDYFNQRAKKLLEVHLASGFRKYIFWFKGKLQGNHTALIQESKDLVAYALINVIAIRKILKKYDKIHYSKQGQLFKSQIQIMHKEIFQKPLLCELMAFHINLRETKVMSREASALFDDCFLTFKDGKPSLTFELFDSMKIDIDLTCPVCLDTVFDPVSLACGHIFCYICANSAASVSIVDGLKAADPKEKCPLCREVAVYKGAVHLEELNILLSRSCPEYWEQRLQTERVERMKQIKEHWESRCRAFVGV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00831 410 Pfam Zinc finger, C3HC4 type (RING finger) 303 356 - -
Rops10g00831 410 SMART ring_2 306 354 IPR001841 -
Rops10g00831 410 ProSiteProfiles Zinc finger RING-type profile. 306 355 IPR001841 -
Rops10g00831 410 CDD RING-HC_BAH1-like 296 369 - -
Rops10g00831 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 408 IPR013083 -
Rops10g00831 410 SUPERFAMILY RING/U-box 298 358 - -
Rops10g00831 410 ProSitePatterns Zinc finger RING-type signature. 321 330 IPR017907 -
Rops10g00831 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 79 409 IPR033326 -
Rops10g00831 410 CDD SPX_BAH1-like 80 233 - -
Rops10g00831 410 ProSiteProfiles SPX domain profile. 79 237 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00831 Rops-Chr10 19130371 19133397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00831 303 355 C3H Transcription Factor Family AT4G28270 39.655 5.54e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00831 K16275 - gmx:100787904 533.102