Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00825 ATGGATGAGCCAAGCAGATTTGGAGTTTATAGAATGAAAGGGGAGTTCTCTGTTGACTTAAAGCTTGGTCAGGTGGGGAATTCTGGCACTGAATCACTACTGCCCAAGTCCAAAGATGCTTCTGCTTCTGCTGCAGTCTCCAAAATGGCATCTTCACCTTCAGGGTCTACTAAGAAAGCTCGAGCTATTAACAATGCAACCCTCACTGTGACATGTCTTGTGGACGGGTGCAATTCAGATCTTAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTCCTGAGGTCACAATTGGTGGCCTCAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCGTTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCACAGCCTGAACCTCTCACGCGACCCAGTAATTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCCTTCTCAAGTCCACATATATACCCTTCCACTACTGTGGTGAACCCCACTTGGAGTGGTGGACTTGTTACTTCCTGTGCAGATGCTGCTAGGCTGCATAACCACAACCAACAACACCAACAATTGCATTTGGTTGATAAACAAGATCTTTTTCTTGGATCTTCTCCAACCTGCTATAAAGAAGAGAAGCAATTTGCATTCTTACAAGGTGACAATGCCGCACTCAACAACCAAAACCCACCTCTTCCAGCTGCTTCTGTGTGCCATACACTTCTCAGGACCAGCCCCTTGTCAGAAAGTTGTGGGGTGAGAAGGAAAATGTTCTGTGATAGTTTAACAAGTTCAATACACGACTCCCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGGGAATGGTTTAAATCGAATGGTGCAGCCTCACTCAATGCCTCTTATGCAGCCTTTAGGCCTGAGCCTGCATGATAATAATAGCTTAGAGTCCGTGGACAGGGTCTTGGTTCCTAATGGTAGTGACCATTGTTCCACAATGTATAACATGGGTTCTGATGGATCTCAGGGCAATGAAGCCCCTCAACTATTTCCCTTTCAATGGGAATAG 1113 0.4555 MDEPSRFGVYRMKGEFSVDLKLGQVGNSGTESLLPKSKDASASAAVSKMASSPSGSTKKARAINNATLTVTCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPSNFLSNYQGTQLLPFSSPHIYPSTTVVNPTWSGGLVTSCADAARLHNHNQQHQQLHLVDKQDLFLGSSPTCYKEEKQFAFLQGDNAALNNQNPPLPAASVCHTLLRTSPLSESCGVRRKMFCDSLTSSIHDSPCALSLLSSSQTHTPGNGLNRMVQPHSMPLMQPLGLSLHDNNSLESVDRVLVPNGSDHCSTMYNMGSDGSQGNEAPQLFPFQWE* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00825 370 Pfam SBP domain 72 145 IPR004333 GO:0003677
Rops10g00825 370 MobiDBLite consensus disorder prediction 348 370 - -
Rops10g00825 370 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 348 IPR044817 GO:0003677
Rops10g00825 370 MobiDBLite consensus disorder prediction 133 157 - -
Rops10g00825 370 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Rops10g00825 370 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Rops10g00825 370 MobiDBLite consensus disorder prediction 348 363 - -
Rops10g00825 370 Gene3D - 63 133 IPR036893 GO:0003677|GO:0005634
Rops10g00825 370 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00825 Rops-Chr10 18923053 18926622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00825 1 370 SBP-box Gene Family AT5G50670 42.932 2.41e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops10g00825 SBP 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00825 - - gmx:100787407 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00825 10 18923053 18926622 Rops10g00825 10 18923053 18926622 ECH
Rops2g00603 2 8590684 8593724 Rops10g00825 10 18923053 18926622 PCT