Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00824 ATGGAAAGACCTTGTTTTAGAGGGATCAGTGACGAAGAAGATGGTGAAACCTCAAAGAAAAAACTTAGACTCTCCAAAGACCAGTCAATTATTCTAGAAGAGAGTTTCAAAGAGCACAATACTCTTAAACCAAAACAAAAGTTGGCACTTGCAAAGCAATTAGGCCTTCGAGCACGACAAGTAGAGGTGTGGTTCCAAAACAAAAGAGCAAGGATCAAGCTGAAGCAAACCGAGGGATTTGATTCAAAAAGCTCTCAAAGAAGGTCGATTGAAGTTCGAACAAAAAAATCTATAAAAATCGATCAGGATCCTCTCAAGACCGAGGCTAGTTATGTGGAACCGCTGGAGATCCTTACAGCAGGGGTCGAAGAAGCCCCCAAAGCAGACATCAATGATGTTGAGCAATTTGAGAAAGAAGAAATGGAAATTTATCCCAAGGCTTTTGAAAGCCTAATCGACTTCTTGTCGAGGAAACGAGAGGTTGATTATGAGGTGATGTTATAA 504 0.4067 MERPCFRGISDEEDGETSKKKLRLSKDQSIILEESFKEHNTLKPKQKLALAKQLGLRARQVEVWFQNKRARIKLKQTEGFDSKSSQRRSIEVRTKKSIKIDQDPLKTEASYVEPLEILTAGVEEAPKADINDVEQFEKEEMEIYPKAFESLIDFLSRKREVDYEVML* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00824 167 SMART HOX_1 17 79 IPR001356 GO:0003677
Rops10g00824 167 MobiDBLite consensus disorder prediction 1 20 - -
Rops10g00824 167 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Rops10g00824 167 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 78 - -
Rops10g00824 167 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Rops10g00824 167 FunFam Homeobox-leucine zipper protein HAT22 23 69 - -
Rops10g00824 167 SUPERFAMILY Homeodomain-like 17 81 IPR009057 -
Rops10g00824 167 Pfam Homeodomain 19 73 IPR001356 GO:0003677
Rops10g00824 167 CDD homeodomain 19 76 IPR001356 GO:0003677
Rops10g00824 167 PRINTS Lambda-repressor HTH signature 46 55 IPR000047 GO:0003677
Rops10g00824 167 PRINTS Lambda-repressor HTH signature 55 71 IPR000047 GO:0003677
Rops10g00824 167 Gene3D - 24 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00824 Rops-Chr10 18870304 18874828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00824 7 78 Homeobox Transcription Factor Family AT4G16780 83.333 1.89e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops10g00824 Homeodomain 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00824 K09338 - jre:108994407 124.02