Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00808 ATGGAGAATAACCAGCAATCCCAATCGGGTTCTTACCCGACCCAAGGAACACCCGCACCACCACCACCACCACCACCGTCAGCAGCAGCACCATTCCACCACCTCCTCCAACAACAACAACAACAACTTCAGATGTTCTGGTCCTACCAAAGACAAGAGATCGAACACGTCAACGACTTCAAGAACCACCAACTCCCCTTGGCTCGCATCAAGAAGATCATGAAAGCCGATGAAGATGTTCGCATGATTTCCGCTGAAGCACCCATACTCTTCGCCAAGGCATGTGAACTCTTCATTCTAGAACTTACCATAAGGTCTTGGCTTCATGCTGAAGAGAATAAACGACGAACCCTACAGAAAAACGACATCGCCGCTGCTATTACTCGCACCGACATTTTCGACTTTCTTGTTGATATTGTTCCCCGTGATGAGATCAAGGATGATGCTTCTATCGTTGGAGCTACTGCTAGTGGTGTTCCTTACTATTATCCTCCCATCGGACAACCCGCCGGCATGATGATTGGCCGTCCCGCCGCCGTGGACCCCTCCACTGGAGTTTATGTCCAGCCACCGTCACAGGCGTGGCAGTCTGTTTGGCAGACCGCCGCAGAGGATGGTTCTTACGGCACCGCCGGAACCAGTGGCCAACCCAATCTTGATGGCCAGAGCTGA 672 0.5193 MENNQQSQSGSYPTQGTPAPPPPPPPSAAAPFHHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDASIVGATASGVPYYYPPIGQPAGMMIGRPAAVDPSTGVYVQPPSQAWQSVWQTAAEDGSYGTAGTSGQPNLDGQS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00808 223 SUPERFAMILY Histone-fold 21 136 IPR009072 GO:0046982
Rops10g00808 223 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 37 160 - -
Rops10g00808 223 MobiDBLite consensus disorder prediction 15 30 - -
Rops10g00808 223 MobiDBLite consensus disorder prediction 1 30 - -
Rops10g00808 223 Pfam Core histone H2A/H2B/H3/H4 46 127 IPR007125 GO:0003677
Rops10g00808 223 Gene3D Histone, subunit A 31 142 IPR009072 GO:0046982
Rops10g00808 223 FunFam Nuclear transcription factor Y subunit gamma 33 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00808 Rops-Chr10 18683477 18688182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00808 3 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.107 9.49e-104 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops10g00808 Histone 1.4e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00808 - - gmx:100818447 361.303