Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00793 ATGCGAGAGAAAACACGCTCACTGTCACGATTTCTCAGAAACATTAGCATATATTTAGCAAACATGGCAGTCACATTCAACGACCTTAGCTCTGAATTTGGGTTGAAGAAGCTTGATGAGTACCTTCTCACTCGCAGTTATATCACTGGGTACCAAACTTCAAAGGATGATCTTACTGTCTATGCAGCTTTGCGAGCAGTCCCATCAGATGAATATGTGAATGTGTCCAGGTGGTACAAGCACATTGATGCTTTGTTAAGAATATCTGATGTTTCTTGTGAGGGATCTGGTGTCACTGTGGAGGGATCTTCTCTGGTGGCTGAAGAGACTGCTGCCACTCCCCCAGCAGCTGACAAAATGGCTACTGCAGCTGAGGATGATGATGATGATGTGGATTTGTTTGGTGAAGAAACTGAGGAAGAGAAAAAGGCAACTGAGGAACGAGCAGCTGCAATCAAGGCATCTGCTAAAAAGAAAGAGTCTGGGAAATCGTCTATTCTGTTGGATGTGAAGCCATGGGATGACGAAACTGACATGAAAAGGCTTGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGATTCCAGACTTACTGATGTTGAGTACGGTATCAAGAAACTGCAAATTTTGCTTATTGTTGTGGATGACCTTGTTTCTGTGGACAATATCATTGAGGAATATCTTACTGCTGAGCCCATCAATGAATTTGTCCAAAGTTGTGACATTGTGGCCTTCAATAAAATATAACGGAAACGACTGAGGAGGCAATCAAGGGACACGCCCTGTGATTCAACTTCCATTCATCACTCCTTTCGATTTCTGAAACTTCAAATCCAACACCGAACCAATTCAAGTGCCCCACCAAAGTCTCATTTTTATCCTGTGACAAAGATTTTAGAAGTAACAATAACAATGGATAATCAAGCAAAGAATGTTGCTGCATCATCCTTGTTTGGTCTTTTTGGAACAACCTCACAGCCTCAGTACCTCAACCTCATGAACCAGCAGAGAAGTCACACAACTAATCTTCTCTCTCGGTTACACCCTCAAACCCACTTCCCTGGTCACTTTCAGCTTTCAGAATCACAATCCCAGGTGCTTGCACAAGCACAGGCACATGCATTGGCACAATTGCAGTCTCAGACTGCACAATCTCAAACTCAGCCTGTTGTCCACTTGCATGATGCCAATACTAATGTTGCCAATGTTACTTCATCCCCGGCCACCGGTAGTGGCAAGCGAGCAACCCAAAAGCCCCCTTCACGGCCTCCTAGTTCGTCTAATGCAAATCAATCCTTGCTTAAGACTATGGAATTGACCCCGGCTTCTCGGCGAAGGAAGAGGGAGTTACAGGAGAAGCAAGTACCAAAAAAGGTGGCTGCACTTCTGCCCGAGTCTGCTTTTTATACTCAGCTGCTTGATTTTGAGGCTCAGATGGATGATGAATTGGCCAGGAGCAAGATTGATTTACAAGAGGCTCTTAGATGCCCTCCCCATTTGCAGAAAACTCTTCGTATTTATGTGTTTAATACCTTCTCGAATCACACAACAATGGATTCTGAGAAGAAAAATGCCGAGGAATCTTCTTGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTGAGGATCCTATGTCTGGAATTTCGCAGGGATCAAGTCTTTCATGCCCAAAGTTCTCTGCTTTCTTCAAGAAAATTACCATATGCTTGGATCAGAGCCTTTATCCTGATAATCATGTTGTTGTATGGGACAGTGCTCGTTCACCTAACCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAGACAAAGAATTCACTGCAGTGATCAGATTAGAAATGAATTATTCACCAGAGAAGTTTATGGTCTCAACACAACTTTCTAAACTTTTAGGGATTGAGGTTGAGACTCGCCCAAGAATAATGGTTGCTCTTTGGCAATATGTGAAGTCCAGGAAGCTACAGAGCCCAGATGACCCTTCATTTTTCACCTGTGATCCGTCTCTCCAAATGTTGTTTGGGGAAGAGAAGATGAAATTCACCATGGCTGCTGAGAAGTTGTTGCAGCATTTGTCAGCACCACAGCCTATACATTTGGAGCATGACATCAAGCTTTCTGGAAGTTGTCCAGCTGGAACTTCATGTTATGATGTGCAGGTTGATATGCCTTTTGCACTGGAGAAGGAAATGTCTGCATTATTGGCAAGCACTGAGAGTCACAAAGAGATGGAAGCTTATGATGAGGTGATTTGCACTTCCTTAAAGAAGATCCAGGAGCATCATAAAAGACGGGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCAGAGTTTATTAATACTTTGATTGCTTCTCAGAGCAAGGATCTAAAACTTGTTGCTGGAGATGGCAACTGTAATGGTGAAAAGGAACTGCGTTCTAAATTCTACAATCAACCATGGGTTGAGGATGCTGTCATTCGGTACTTGAACCGCAAAACTGCTGGAAGTGATGCTCCTGGAGGCAACTAA 2520 0.4349 MREKTRSLSRFLRNISIYLANMAVTFNDLSSEFGLKKLDEYLLTRSYITGYQTSKDDLTVYAALRAVPSDEYVNVSRWYKHIDALLRISDVSCEGSGVTVEGSSLVAEETAATPPAADKMATAAEDDDDDVDLFGEETEEEKKATEERAAAIKASAKKKESGKSSILLDVKPWDDETDMKRLEEAVRSVQMEGLLWGDSRLTDVEYGIKKLQILLIVVDDLVSVDNIIEEYLTAEPINEFVQSCDIVAFNKI*RKRLRRQSRDTPCDSTSIHHSFRFLKLQIQHRTNSSAPPKSHFYPVTKILEVTITMDNQAKNVAASSLFGLFGTTSQPQYLNLMNQQRSHTTNLLSRLHPQTHFPGHFQLSESQSQVLAQAQAHALAQLQSQTAQSQTQPVVHLHDANTNVANVTSSPATGSGKRATQKPPSRPPSSSNANQSLLKTMELTPASRRRKRELQEKQVPKKVAALLPESAFYTQLLDFEAQMDDELARSKIDLQEALRCPPHLQKTLRIYVFNTFSNHTTMDSEKKNAEESSWSLKITGRILEDGEDPMSGISQGSSLSCPKFSAFFKKITICLDQSLYPDNHVVVWDSARSPNQQDGFEVKRKGDKEFTAVIRLEMNYSPEKFMVSTQLSKLLGIEVETRPRIMVALWQYVKSRKLQSPDDPSFFTCDPSLQMLFGEEKMKFTMAAEKLLQHLSAPQPIHLEHDIKLSGSCPAGTSCYDVQVDMPFALEKEMSALLASTESHKEMEAYDEVICTSLKKIQEHHKRRAFFLSFSQSPAEFINTLIASQSKDLKLVAGDGNCNGEKELRSKFYNQPWVEDAVIRYLNRKTAGSDAPGGN* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00793 838 Gene3D - 19 100 - -
Rops10g00793 838 FunFam Elongation factor 1-delta 1 24 99 - -
Rops10g00793 838 Pfam EF-1 guanine nucleotide exchange domain 165 252 IPR014038 GO:0003746|GO:0006414
Rops10g00793 838 CDD SWIB_like 626 694 - -
Rops10g00793 838 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 127 135 IPR001326 GO:0003746|GO:0005853|GO:0006414
Rops10g00793 838 MobiDBLite consensus disorder prediction 109 128 - -
Rops10g00793 838 MobiDBLite consensus disorder prediction 443 457 - -
Rops10g00793 838 Gene3D - 156 252 IPR014717 -
Rops10g00793 838 MobiDBLite consensus disorder prediction 404 457 - -
Rops10g00793 838 SUPERFAMILY SWIB/MDM2 domain 614 704 IPR036885 -
Rops10g00793 838 CDD EF1B 161 252 IPR014038 GO:0003746|GO:0006414
Rops10g00793 838 SMART swib_2 620 699 IPR019835 -
Rops10g00793 838 ProSiteProfiles SWIB/MDM2 domain profile. 619 696 IPR003121 -
Rops10g00793 838 Pfam SWIB/MDM2 domain 623 694 IPR003121 -
Rops10g00793 838 Coils Coil 135 155 - -
Rops10g00793 838 SUPERFAMILY eEF-1beta-like 160 252 IPR036219 -
Rops10g00793 838 MobiDBLite consensus disorder prediction 404 441 - -
Rops10g00793 838 Gene3D SWIB/MDM2 domain 616 701 IPR036885 -
Rops10g00793 838 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 30 252 - -
Rops10g00793 838 SMART EF1_GNE_2 163 252 IPR014038 GO:0003746|GO:0006414
Rops10g00793 838 SUPERFAMILY GST C-terminal domain-like 32 89 IPR036282 -
Rops10g00793 838 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 241 252 IPR001326 GO:0003746|GO:0005853|GO:0006414
Rops10g00793 838 FunFam Elongation factor 1-beta 1 like 157 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00793 Rops-Chr10 18480420 18491394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00793 26 252 Eukaryotic Initiation Factors Gene Family AT2G18110 73.684 4.31e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Rops10g00793 EF1_GNE 7.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00793 K11650 - gmx:100784907 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00793 10 18480420 18491394 Rops10g00793 10 18480420 18491394 ECH