Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00788 ATGGCTTCTTCTACCTCTCTTTCCCTCTCCCCTTACACCTTCTATCTCCCTCCAAAACCACCCAGCTTCTCCGTCACCGTTTCCGCGCTCTCAGGCACTGATGGATCTAATTCTAAAGTACCTCGCAAAAGAACGAGAAGAATAGAAGGTCCTAGAAAGAGCATGGAAGATTCTGTTCAACGCAAGATGGAGCAATTTTACGAAGGTTCCGATGGTCCACCCCTTCGTGTTCTCCCTATCGGTGGTTTAGGTGAAATTGGCATGAATTGCATGCTTGTTGGGAATAATGACCGTTATATCCTTATTGATGCTGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTACAAAAGATTATACCTGATACAACGTTTATAAGAAAATGGAGCCACAAAATTGAAGCGCTTGTGATAACACATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATTCCAGCATTGGATTCCAATACACCAATTTTTGCATCTTCTTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCTAGACTCAAAATGTTTCAAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGGCACCATTAGATGGGAAAGTTTTTGATCGTGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCTCCTGGAAGGACAACCAGTGAATCTGTTGTGGCGGATGCACTATTGAGGCATATTTCAGCATCTAAAGGAAGGATTATTACAACCCAGTTTGCATCAAATCTGCATCGGCTTGGAAGTGTAAAAGCTGCTGCTGATTTAACTGGCAGGAAGTTGGTATTTGTTGGTATGTCTTTACGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCATTCTGGTAAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATAGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCTTACGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATGTTGTTTTGTATTCAGCCAAGGTTATCCCTGGTAATGAGTCACGTGTGATGAAAATGCTAAACCGCATATCAGAGATTGGATCAACAATAGTTATGGGAAAAAATGAAGGTTTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAGCACGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGGGTCCTTTCTAATGGTTTCATTTCCCTTGGGAAAGAGAATTTACAGTTGAAATATAGTGATGGTGACAAAGCATTTGGTACATCAAGCGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTGATTAGCATGGAAATATTCCATCCTAAAAATTTAGACAGTTTGGTTGAAAACTCCATAAAAGGGAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGATGGATGCACTCTATAAAGCTGCTCATGCGGCTCTTTCAAGCTGTCCTGTTAACAGTCCACTGTCTCACATTGAAAGAACGGTGTCTGAGGTGTTGAGGAAGATGGTGAGAAAGTACAGTAGTAAACGGCCTGAAGTTATTGCCATTGCTGTAGAAAATCATGCATCGATTCTTGCTGATGAGATAAACACAAAATTGTCTGGCAAATCCCATGTGGCTCCTGCAATATCAACATTAAGAAAAGCAGTGGATGGGCATGGAAAGGAAAATCAGTCCAACACAAAATTGTCTGGCAAATCCCATGAGGCTCCTGGACTATCAACATTAAGAAAAGCAGTGGATGGACATGGAAAGGAAAATCAGTCAACCACACTGCAAATAAGAGATGATGACATTGATTTTGGAGGACTATTACCTGAGGAAGACACAACTACAAGTGGAGCTGAGGGTGATTTATCTGATTCAGAGGATTCCAATAAATTTTGGAAACCATTCATATCATCGGTTGAGAAGTCAATCAAAGGTAACAATGGTTATGTTTCACGAAAGGAGCACAAGTCCAATCTGAAAAAAGATGATTCTAAAGATGTTGATGAAGCCAAGTCTGAAGAAACGTCTAATTCTGAACTCAAGTCTGAAGAATTGTCTGATTCGGAACCCAAGTCTTCAAAATCAGTGAAGAGAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTAGTTTGCGAGGGGAACTACAAGACAGATTTCAAGTAGTGAAGCGAAGGATGGCTCTGTGGGAAGAGATATCTCAAAACTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTCTGTGGACATCTTTGGTACTTAAATATGAGGACATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCAATATCTTGAGGACATGGAAAGGATAATGTCCGATGAGGAAACACCAGCGACAAAGTGA 2712 0.4089 MASSTSLSLSPYTFYLPPKPPSFSVTVSALSGTDGSNSKVPRKRTRRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNNDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFVPSRLKMFQTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDEAPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRIITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSILVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDVVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVISMEIFHPKNLDSLVENSIKGKIRITTRCLWLDKGKLMDALYKAAHAALSSCPVNSPLSHIERTVSEVLRKMVRKYSSKRPEVIAIAVENHASILADEINTKLSGKSHVAPAISTLRKAVDGHGKENQSNTKLSGKSHEAPGLSTLRKAVDGHGKENQSTTLQIRDDDIDFGGLLPEEDTTTSGAEGDLSDSEDSNKFWKPFISSVEKSIKGNNGYVSRKEHKSNLKKDDSKDVDEAKSEETSNSELKSEELSDSEPKSSKSVKRNKWKAEEVKKLISLRGELQDRFQVVKRRMALWEEISQNLLADGISRSPGQCKSLWTSLVLKYEDIKNEKDSKKSWQYLEDMERIMSDEETPATK* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00788 903 MobiDBLite consensus disorder prediction 29 55 - -
Rops10g00788 903 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 432 469 IPR011108 -
Rops10g00788 903 Gene3D - 276 426 IPR042173 -
Rops10g00788 903 ProSiteProfiles Myb-like domain profile. 804 868 IPR001005 -
Rops10g00788 903 SMART Lactamase_B_5a 87 284 IPR001279 -
Rops10g00788 903 Gene3D - 79 491 IPR036866 -
Rops10g00788 903 PANTHER RIBONUCLEASE J 1 903 - -
Rops10g00788 903 MobiDBLite consensus disorder prediction 758 809 - -
Rops10g00788 903 Pfam Beta-lactamase superfamily domain 98 234 IPR001279 -
Rops10g00788 903 CDD RNaseJ_MBL-fold 78 489 - -
Rops10g00788 903 Pfam Myb/SANT-like DNA-binding domain 809 893 IPR044822 -
Rops10g00788 903 MobiDBLite consensus disorder prediction 661 738 - -
Rops10g00788 903 MobiDBLite consensus disorder prediction 39 55 - -
Rops10g00788 903 CDD GT1 810 875 - -
Rops10g00788 903 SUPERFAMILY Metallo-hydrolase/oxidoreductase 75 489 IPR036866 -
Rops10g00788 903 Gene3D - 812 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00788 Rops-Chr10 18411161 18422784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00788 811 895 Trihelix Transcription Factor Family AT2G38250 34.483 1.05e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops10g00788 Lactamase_B_2 5.4e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00788 - - gmx:100783850 1459.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00788 10 18411161 18422784 Rops10g00788 10 18411161 18422784 ECH
Rops2g04113 2 74812110 74826908 Rops10g00788 10 18411161 18422784 PCT