Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00783 ATGGCCAACCAAACACACAACACCATTGATCCAAACAGCGGTTTCTGTTCTCATTCTAGAACCTTCCACAGCCTCCGTCCAAACGTCCCTCTCCCTCCGCCATCTCAGCCTCTCTCTCTAACCGACTACGCCCTCTCTCTCCTTCCCCCTGCCGTCACCGCCACCAACACCGCCGCGCTCATAGACTCCACCACCGACCGCCACCTAACTTACTCCCTCTTCCTCCGCCAAGTAAAATCCCTCACTCACTCACTTCAATCCCTCACCCCTCTCAAAAAAGGCCACGTGGCATTCATCCTCACCCCTACTTCCCTGCACGTCCCTGTACTCTATTTTTCTCTTCTTTCACTTGGTGTTACAATCTCACCCGCTAACCCACTCGGTACTCCCTCCGAGGTGACTCACCAGGTTCAACTCACCAAACCCGTCATCGCTTTTGCAACTTCCTCCACCGTAACGAAAATCCCGACTACCGCACTCCCCTTCGGCACAATCCTACTCGACTCGCCGTTCTTCCTTTCCATGCTTGAAGCTAACACCGAGCCAATTCGCCGAGTGGAAACGAGTCAATCTGACTCAGCGGCGATTCTCTTCTCTTCAGGCACCACAGGACGAGTCAAGGGCGTGTTACTCACTCACAGGAACCTCATCGCTTTGATTGGAGGGTTTTGTCACCTGAGAAACGTGGTTGACCAGGAAGAAAATGAACCGGACCCGGTTTCACTTTTCACTCTCCCACTCTTCCACGTGTTTGGGTTCTTCATGTTGGTTAGGGCTTTAGCGATGGGTGAGACCTTGGTGTTAATGCAGAGGTTCGATTTTGAAGGGATGCTGAAGGTTGTTGAGAGGTATAGGATAACCTACATGCCGGTATCGCCGCCGCTTGTGGTGGCGCTGGCTAAGTCGGAGTTGGTGAAAAGGTACGATCTTAGCTCTCTCCGGTTGCTGGGGTGCGGTGGCGCGCCGCTTGGTAAGGAGGTGGCGGAGAACTTCAAAGTTAGATTTCCCAACGTGGAAATTGTGCAGGGCTATGGTCTTACTGAAAGTGGAGGAGGGGCAGCAAGGATGTTAGGGCCTGATGAGGCTAAGCGTCATGCTTCAGTGGGTAGACTAGCAGAAAATATGGAGGCCAAGATAGTGGACCCTGTAACTGGAGAGGCATTACCTCCTGGCCAGAAAGGGGAGTTGTGGTTACGAGGTCCAACTATCATGAAAGGTTATGTAGGAAATGACGAAGCGACTGCTGAAACATTGGATTCAGAGGGATGGTTGAAGACTGGTGATCTTTGTTATTTTGACTCTGATGGTTACCTATTCATTGTAGATAGGTTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTGGAACACATACTTCACACCCATCCTGAAATTGCTGATGCTGCAGTAGTTCCGTATCCTGATGAAGATGCAGGGCAGATTCCAATGGCCTTTGTGGTAAGAAAGCATGGAGGCAACATCACTGCAAATCAGGTCATGGAGTTTGTGGCAAAGCAGGTTGCACCATACAAGAAGATACGACGTGTTTCTTTCATTAACTCTATTCCAAAATCTCAGGCTGGCAAAATTTTGAGAAGAGAATTGATTGATCATGCTCTATCTAGTGGTTCATCTAAATTGTGA 1659 0.4967 MANQTHNTIDPNSGFCSHSRTFHSLRPNVPLPPPSQPLSLTDYALSLLPPAVTATNTAALIDSTTDRHLTYSLFLRQVKSLTHSLQSLTPLKKGHVAFILTPTSLHVPVLYFSLLSLGVTISPANPLGTPSEVTHQVQLTKPVIAFATSSTVTKIPTTALPFGTILLDSPFFLSMLEANTEPIRRVETSQSDSAAILFSSGTTGRVKGVLLTHRNLIALIGGFCHLRNVVDQEENEPDPVSLFTLPLFHVFGFFMLVRALAMGETLVLMQRFDFEGMLKVVERYRITYMPVSPPLVVALAKSELVKRYDLSSLRLLGCGGAPLGKEVAENFKVRFPNVEIVQGYGLTESGGGAARMLGPDEAKRHASVGRLAENMEAKIVDPVTGEALPPGQKGELWLRGPTIMKGYVGNDEATAETLDSEGWLKTGDLCYFDSDGYLFIVDRLKELIKYKAYQVPPAELEHILHTHPEIADAAVVPYPDEDAGQIPMAFVVRKHGGNITANQVMEFVAKQVAPYKKIRRVSFINSIPKSQAGKILRRELIDHALSSGSSKL* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00783 552 Gene3D - 446 546 IPR045851 -
Rops10g00783 552 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Rops10g00783 552 Gene3D - 32 445 IPR042099 -
Rops10g00783 552 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Rops10g00783 552 SUPERFAMILY Acetyl-CoA synthetase-like 56 545 - -
Rops10g00783 552 CDD 4CL 59 540 - -
Rops10g00783 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 15 543 - -
Rops10g00783 552 Pfam AMP-binding enzyme 55 450 IPR000873 -
Rops10g00783 552 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00783 Rops-Chr10 18288522 18292159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00783 1 552 Monolignol Biosynthesis Gene Families AT5G63380 61.484 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00783 K01904 - gmx:100804044 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00783 10 18288522 18292159 Rops10g00783 10 18288522 18292159 ECH