Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00762 ATGGCCCAAGTTGGCAAGGTACGAGTATGTGTGGCGTGCACTCAGAACTGTCCATTGTTTCATGGAACACCCAAAACCTCCCCTACCTCTTTCTTCAAAGTCATCGTTCATCAAAATGATCTCAAAATTTTGTATATTCCTCCTATGTTTAATCGTACTATGTCAGTCTTGGTTGATAAGGAAATCACTCTCAAGGATTCAAGCGGGCAGAGATGGATTGTAACAGTATTAAATGTTGATGGTTCTTTTGCTTTCGAGGAAGGATGGAATGTTTTTTCTTTGGATCACAGGCTTGAGATTGGAGATTTTCTGGTATTCAATTGCATTGGCAAATTGCACTTTGATGTCAAGATCTATGATGAATCTGGGTGTGAAAGGCTTGATTTTTCTAAAAGCAGAAATCAGAAAAAAAGAATCAGAAGCAGAAATGGCTCTCCTGATAGAGATGGTATGTTGGTTAGACAAGGTCCAAATGCCTCACTTGTCTCCAACCCTGATGTGCCACAAATGAATCACCAGCCCAGGGAGGTTTATTCAGGAGGAACACAAGATTGTATAAATAATATTTTGGAAAATGATAAAAACAATGGAAGTGCCCAAATTGTGTGCACACCAGAACTCTGTGAAGACCCAGGTTATATGACAAGCCTAGAATTTGAAGACAAAGAAAGAGATGAGAACACCTGTGGTTTTGAGGGGACTATGAGAATTACAACTGGAGATTCAAAAGTTCCTCTTGTTGAATATGGATCTCATATACATCCAATTGATGCAACCTTATGTAACAAAGATTCTATGGTTGAAGAGATATTGGGTATAGGAGCTGCCTCAGATATATCTGAACTTGAAATGTCTGGAAGAAATAATTCTCACAGTGAGACAAACAAAAGCGCATACAACAAGACTTCTACTTCCACTATTATTGCTTCGAACAGAAATTACAAGTGTTTACCTTTTTGTTTTTTATCAGGTGAAATGAAGTTGCCTGTGGACATGACTCCCAAATTGTGCAGTTTCAAGGATAAATTGCATGCTACAGGTAAAATATCCGAAAAGAGTGAGAAAGAGATTGTGACTCCTGATGTGTGCAAGCATAAGGATAAATTGGGAGCAACGGGGTTGCCAAAGGTTATTAAGGGAGAGTTGGGTCATAGTTCCCACAAGTTTGATGAAGACAATGAGAGTAACTTCGAAACTGCAGCAACTGTCTCCTGTGTGGTGCCCACTGATAATGATTGTCTTAAATTGCCCACAAGCTTGCCTTTGTCTCACTGGGGATGGGTACGAAAGGAGAGGATGGTGGTGTTACTTCGGGATCCACTGATGAGGTTATGGCCAGTCCTTTACCATGAAAAATCGATGCTTAAAATACTGACACATGGATGGTCAGATTTTCAAAGAGCAAATAACATTCAACCAGCTGATGTGTGTGTTTTCCAGGTTGAGAACGAGTCTCAACGAATCTTTAATGTACATATAGTTCACAAGGGATATTCGTAG 1500 0.3973 MAQVGKVRVCVACTQNCPLFHGTPKTSPTSFFKVIVHQNDLKILYIPPMFNRTMSVLVDKEITLKDSSGQRWIVTVLNVDGSFAFEEGWNVFSLDHRLEIGDFLVFNCIGKLHFDVKIYDESGCERLDFSKSRNQKKRIRSRNGSPDRDGMLVRQGPNASLVSNPDVPQMNHQPREVYSGGTQDCINNILENDKNNGSAQIVCTPELCEDPGYMTSLEFEDKERDENTCGFEGTMRITTGDSKVPLVEYGSHIHPIDATLCNKDSMVEEILGIGAASDISELEMSGRNNSHSETNKSAYNKTSTSTIIASNRNYKCLPFCFLSGEMKLPVDMTPKLCSFKDKLHATGKISEKSEKEIVTPDVCKHKDKLGATGLPKVIKGELGHSSHKFDEDNESNFETAATVSCVVPTDNDCLKLPTSLPLSHWGWVRKERMVVLLRDPLMRLWPVLYHEKSMLKILTHGWSDFQRANNIQPADVCVFQVENESQRIFNVHIVHKGYS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00762 499 SMART B3_2 31 122 IPR003340 GO:0003677
Rops10g00762 499 SMART B3_2 405 497 IPR003340 GO:0003677
Rops10g00762 499 CDD B3_DNA 430 493 IPR003340 GO:0003677
Rops10g00762 499 CDD B3_DNA 30 120 IPR003340 GO:0003677
Rops10g00762 499 Gene3D - 24 124 IPR015300 -
Rops10g00762 499 MobiDBLite consensus disorder prediction 157 171 - -
Rops10g00762 499 PANTHER B3 DOMAIN-CONTAINING 26 484 - -
Rops10g00762 499 SUPERFAMILY DNA-binding pseudobarrel domain 412 495 IPR015300 -
Rops10g00762 499 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Rops10g00762 499 Gene3D - 382 497 IPR015300 -
Rops10g00762 499 ProSiteProfiles B3 DNA-binding domain profile. 399 497 IPR003340 GO:0003677
Rops10g00762 499 Pfam B3 DNA binding domain 411 494 IPR003340 GO:0003677
Rops10g00762 499 Pfam B3 DNA binding domain 31 120 IPR003340 GO:0003677
Rops10g00762 499 SUPERFAMILY DNA-binding pseudobarrel domain 26 124 IPR015300 -
Rops10g00762 499 MobiDBLite consensus disorder prediction 135 171 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00762 31 147 B3 DNA Binding Superfamily AT5G66980 33.058 1.26e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops10g00762 B3 5.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00762 - - ccaj:109789322 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00762 10 18098485 18103699 Rops10g00762 10 18098485 18103699 ECH