Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00756 ATGGGAAACTCTGAATCCGAATCAATTCGTTCCCCCATCAAAGACAAAGACCCACAATTGGGTTCTCAGGGTGAAGCTTTTCCCCCTATTGTTCACCATGATCATGATCCTCAAGCCTCAGATCTCAATCACAAGTCCCAGGTTGATGATGAACTTGGTGGGGAGCTTCAGACCAAGTTGGATTTGAAAGATGGGGATGAAACTGATAATAAAGATTCAATTTTTGAAGCTGGGGTTGAACAATTGTGTGATGAAGTTGATGCCCCAGAACCTGATAAGGGTCAAGGTTTTGATGATGATGATGATGGTTGGAATGTTGGTGATGAGAATGGGATTGAGAATGTGAATGAAAGTGGGAGCGATAAGGTGGGTGGAGATGTTGATGGTGGTGAAGTGGAGAACAAGGATGATAGAAACAGTGGTAGAGCTCAACAGCATCCTTTGAGGCCTGAAGCTGAAGACTGTGCATTTTATCTCAAGACTGGGACTTGCAAATTTGGATTTAACTGCAAGTTTAATCACCCGGTTAGAAGGAAAAATCAGGCTGTTAACGAGAAGGCGGGAGATAGAGATGAACTGGAGGAAAGATCAGGCCAGACAGAATGCAAGTATTATTTAAGGTCTGGGGGTTGTAAGTTCGGAAAAGCTTGTAAATTTAATCACACAAGAGGAAAGGGTTCAGCACCCCCAGTTTTAGAGCTTAACTTCCTCGGCCTGCCTATTCGTTTGGGAGAGAAAGAGTGCCCATATTACATGCGCACTGGCTCTTGTAAGTTCGGAGCAAACTGCAAGTTTAATCATCCTGAACCTACAGCTGTGGGAGGATGTGATTCCCCTTCAGGGTATGGCAATGGAAGTTCTATTTCATTACAAGGTGTATCACAATCATCTATACCCTCGTGGTCTTCTACTAGATCATTAAATGAAACTGCTCCTTTTGTGCCACTGATACTTTCGCCGACTGCAGGGGTTTCTCCCCAAAGTCCTGAATGGAATGGATATCAGGCACCTGTCTATTTATCTGAGAGGAGTATGCGTCCATCTTCAACATTTGTCATGAACAACCCAGCTATTGAAACAGATGTTTACATGCACCATCAAAAGCAGATGCCTGTTGAAGAGTTTCCAGAAAGGCCTGGTGCACCCGAATGCAGTTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTACAAGATTACCTCCATGTAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAATGTGTGCACGCATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAGGTTTGACCATCCAATAAACCCGTCACTGTCAACTATGCCTGGACTTGATCAACAATCCTCCTACACAAACTCAGCTGGTGTTGATATGGCTGGGATGGGTGGAAATGGAGGTGCCAGTGATGCAACAATTCAGCAGCCTGTGTAA 1482 0.4399 MGNSESESIRSPIKDKDPQLGSQGEAFPPIVHHDHDPQASDLNHKSQVDDELGGELQTKLDLKDGDETDNKDSIFEAGVEQLCDEVDAPEPDKGQGFDDDDDGWNVGDENGIENVNESGSDKVGGDVDGGEVENKDDRNSGRAQQHPLRPEAEDCAFYLKTGTCKFGFNCKFNHPVRRKNQAVNEKAGDRDELEERSGQTECKYYLRSGGCKFGKACKFNHTRGKGSAPPVLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPEPTAVGGCDSPSGYGNGSSISLQGVSQSSIPSWSSTRSLNETAPFVPLILSPTAGVSPQSPEWNGYQAPVYLSERSMRPSSTFVMNNPAIETDVYMHHQKQMPVEEFPERPGAPECSYFLKTGDCKFKSNCKFHHPKNRITRLPPCNLSDKGLPLRPDQNVCTHYSRYGICKFGPACRFDHPINPSLSTMPGLDQQSSYTNSAGVDMAGMGGNGGASDATIQQPV* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00756 493 SUPERFAMILY CCCH zinc finger 383 407 IPR036855 GO:0046872
Rops10g00756 493 SUPERFAMILY CCCH zinc finger 147 177 IPR036855 GO:0046872
Rops10g00756 493 MobiDBLite consensus disorder prediction 467 493 - -
Rops10g00756 493 MobiDBLite consensus disorder prediction 1 148 - -
Rops10g00756 493 PANTHER PROTEIN PHOSPHATASE RELATED 15 461 - -
Rops10g00756 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 381 405 IPR000571 GO:0046872
Rops10g00756 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 175 IPR000571 GO:0046872
Rops10g00756 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 221 IPR000571 GO:0046872
Rops10g00756 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 427 450 IPR000571 GO:0046872
Rops10g00756 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 269 IPR000571 GO:0046872
Rops10g00756 493 ProSiteProfiles Zinc finger C3H1-type profile. 424 452 IPR000571 GO:0046872
Rops10g00756 493 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Rops10g00756 493 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
Rops10g00756 493 SUPERFAMILY CCCH zinc finger 243 270 IPR036855 GO:0046872
Rops10g00756 493 Gene3D - 126 186 - -
Rops10g00756 493 Gene3D - 333 413 - -
Rops10g00756 493 MobiDBLite consensus disorder prediction 29 74 - -
Rops10g00756 493 SUPERFAMILY CCCH zinc finger 200 224 IPR036855 GO:0046872
Rops10g00756 493 ProSiteProfiles Zinc finger C3H1-type profile. 378 406 IPR000571 GO:0046872
Rops10g00756 493 SUPERFAMILY CCCH zinc finger 422 450 IPR036855 GO:0046872
Rops10g00756 493 Coils Coil 176 196 - -
Rops10g00756 493 Gene3D - 424 472 - -
Rops10g00756 493 Gene3D - 192 277 - -
Rops10g00756 493 SMART c3hfinal6 242 269 IPR000571 GO:0046872
Rops10g00756 493 SMART c3hfinal6 424 451 IPR000571 GO:0046872
Rops10g00756 493 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Rops10g00756 493 SMART c3hfinal6 378 405 IPR000571 GO:0046872
Rops10g00756 493 SMART c3hfinal6 196 223 IPR000571 GO:0046872
Rops10g00756 493 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Rops10g00756 493 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00756 Rops-Chr10 17939318 17945670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00756 374 492 C2H2 Transcription Factor Family AT3G02830 40.336 2.27e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops10g00756 zf-CCCH 3.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00756 - - gmx:100786894 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00756 10 17939318 17945670 Rops10g00756 10 17939318 17945670 ECH