Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00755 ATGGCAGGTTCAGAGGCGGTAAACGGCGACGTTTTCCCATGGCTGAAATCCATGCCGGTGGCGCCGGAGTACAGGCCAACCGCGGCGGAGTTCGAAGATCCAATTGCTTACATTTTCAAGATCGAGAAAGAAGCTTCCAGATACGGCATCTGCAAAATCATTCCACCGTTTCCACCGTCGCAGAAGAAAACCGCCATTGCGAACCTGAACCGTTCACTCTCCAAGTCCACATTCACGACACGTCAGCAACAGATCGGGTTCTGTCCCAGGAAAACCCGACCCGTCCAACGACCCGTTTGGAAGAGTGGCGAACACTACACCTTCCAAGAGTTCGAAGCAAAGGCGAAATCGTTTGAGAAAAACTACCTCAACAAACTCAACCGTCATAACAAGAACAACAACAACAACAAACAACATCCGCTTGAAACAGAAACACTCTTCTGGAAGGCCACGTTGGATAAACCGTTTTCAGTTGAGTATGCTAACGACATGCCGGGTTCTGCGTTTTCGCCGAAATGCCGGCACGCCGGTGAGGCTGCTTCATTGGCTCACACTGCTTGGAACATGAGAGGGGTTTCGAGGGCGAATGGTTCACTATTGAGGTTCATGAAAGAGGAGATTCCTGGAGTAACTTCGCCTATGATTTATGTTGCAATGTTATTCAGCTGGTTTGCTTGGCATGTTGAGGATCATGACCTTCATAGCTTGAATTACCTTCACATGGGTGCTGGAAAGACATGGTATGGTGTGCCTAGGGATGCGGCGGTGGCATTTGAGGAGGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGCGAGAAAACTACAGTGATGTCACCTGAAGTATTTATCGGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCGGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGCGGGAATTGGTGCTGAACCTCGGAGTTCTCGTCTTAAAGATAAGAAGAAAGGTGAAGGAGAAACTGTGATTAAAGAACTATTTGTCCATGATGTGTTACAGAACAATGATCTGCTTCATGTACTTGGAAAAGGATCTGCTGTAGTAATTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATGCCAACAACTAAAAGTGAACCCTGGGTTTTCCATCAATGCATGCCATTCTGAGGGAATGGATTCCTCAAAAGGTTACGTTTCTGATGATCTGATGTTCAGTAGGAATCATGGAATCAAGCAAGAAAGAAGTTTCTATTCTGTGAAAGACAAGTTTACTACTTTGTGTGAAAGGAACAGGATTTCCTCGTTTGATGCAAATGGTAACACATGCACTTCAAGTTCTAAGCCACTTCAAAGAGACACTGAAAACGAAACTAGTCAAGGAAATGGGTTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATTTTAAGCTTTATCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGTAGCTTCTTTAATGACTGGGTTGTTGGCTCTGGAGTATCTGGCAATAAATTTACTGCTGCCCATGAAGATGCAAATATTCCTGAGCCAAATATGTATACAGGCAGGCCTCTGGGTCATATGCTCATCAGGAAATATGTCTATTTATTTGGTCAGTGTCCTTCTGTATGGTGGATGAAAACAAATGCCCAAAATGATTCACATGATGTTCCTGTTCTATCTTCTCACAACCAGATACAGACTGTGCATCGAAATTATGAGGATGCTTTAAATACTGAAAGAGGAAAAGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGGGTGACCCAGATATTGCAGTTGAAGGTCATGAATCAGATGCGATAAACTCTACATCAGGAAGATCACCTTCTCATTTTCGAGATTCCCATGCTAATCCCATGACTAGACTTGATAGGGGAGATGGTATTCCTTCAGAGAATGTCAGTTACGAGGATTTTATGCATCGTAGATTTGAGTGTAATTTGAGTCATCGGTCTTTTGACCACTCTTTTGAGAAACAGGATTGTAAAATCACTTCAGGGGTTGCATCTAAAAATACAAGGACAGTGTCTAATTCCACCTCCAATTGTTCCCAAGATGCTCATGATGCTGAAAACTCATTGTCAGTCAAGGCTATTGTTCCCATCGATAATAAAAATGCATTGTTGGTGCCACAGTCTGATGAAGACTCATCTAGATTACATGTATTCTGTCTAGAGCATGCTGTAGAAGCAGAGCAGCAGCTTCGGCCAATAGGTGGAGCCCACATATTGCTACTATGTCATCCAGATTATCCCAAGATAGAGGCAGAAGCAAAGTCGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTGCATACAGACATGCCACCAAGGAGGATGAGGAGAGAATCCAGTCAGCTCTGGATAGTGAGGATGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGACTCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCGCCTCTTTATAGTAAACAGATGCCTTATAACTCTGTTATATATCATGCATTTGGTCGTAGCTCTCCAGCAAACTCACCCATAGAACCAAAGGTCTATCAGAGAAGAGCCAACAAGCAGAAAAAAGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGCGAAATGCTTACATGGATGGATATCACCTGATGAGAAGATTGAGAGATTGGAAAGTACTCCCAAAAGTGAAACTAATATAAAAAAATCTGGCAGGAAAAGGAAGATGACTGTAGAGAGTAAGCGAACCAGGAAAGGAAGTTTTGCTGAGAAAGATGCGGTTTTGGATAATTCCACTGAAGACAAACCCAATACTCAGCCAAGGAAGATTCTTAGAAGTATGCAAGCTAGGCATGTTGAGAGAGATGGTACCGCATTGGAAGGGGATTATTCTCCTCCATATAATCATAGAAAACCCATAAGCAAGCAAAAAATTGGCACTGAAAGTGATGCAGTTTCTGATGATTCGCTTGATGATAATTATCACATGCGGCATAGAAGAAATTTTAATGTCAAAAAAGCTAAATTTATTGACAAAGATGTTTCAGATGATACAGTGGACTATGATTCTGATTCGCAGCAGAGGGAAGAACTTGGAAGCAAGGACATTGAAGACACAGAGAGAGATTCAATTTCAGAAGATTCTTTAGATATTGGTTCCCTTCAGCTGCACAGGAAGACTTCTAAAAGCAAACATGCCAAATACATTAGTGAAGAAGATGGAATTTCTGATGACCAAATGCAGAATCGTTGTCAGAAGCAGCAAAGGAGAATTCCTAAAAGCAGGCAAGGGAAATACCTTGCTGAAAAAGATATGACATCTGATGACCAACTGGAGCTGAACATGCGGAAGCAGCGACGGAGGAATCCTAAAAGTAGGCAAGCCAAATACCTTGCTGAAGAGGATATTGCATCAGATAACCAACTGGAGGGCCATTGTCGCAAGTATCGAAGTTGGACTCCAAAAGGCAGGCGAGTCAAATGTGTAGCAGGGGAAGATGTGATGTCTGACAATCAATTGGAGGATGACTTTCAAAAGCAGCAAACAAGTTTTTCTAAGAGAAGGCAAAACAAAGGCATTGATAGAGAAGTTAAAAATGTAACATCTGATGACCAATTGGAGGACCGCTTTCAGAAGCAGCATAGAAAATTTCCCAGGAGCAGGCAAAACAAACGCATTCATAAGAAAGTTATGGATGACTCGGCTGAAAGTAATTCCCATCTGCTACATAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGATGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATTCTCATCAGCAGCACAAGAAAACTGTTCGAAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAACAAGTTAATTCCCTTCAGGTGAAAAACCAGAAATCTCGGCCAGTAAAACGAGGGGCTCGGATGCTAATGAAATCAAAGACTCCTCAGCAAGTGAAACAGCCTTCTCAATCGCGGAATAAGCAATCTGGTAACTCCAGAGAGTTTAATTCACATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACGCGCCTTAGGAAGAGACTCCCAAAAGCTGACGAGTCTGAAGGAAAATTAAAAGACAAGCAAACCAAAAGGAAAAAGGTGAAGAATACTCCAGCTGGAAAGGTTTCAGCTGGCCATGCCAAAACAAAAGATGAGGAAGCAGAATACCAATGTGACATTGAGGGATGCACCATGAATTTTGGGTCAAAACAGGAGCTGATGCATCACAAGAAAAACATCTGTCCTGTAAAAGGGTGTGGGAAGAAATTCTTCTCACACAAATATCTGGTGCAACACCGTCGAGTTCATGAGGATGAACGCCCTCTAAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTAGAGTCCACACTGGTGCACGACCTTATGTATGTGCTGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGCCATAAGAGAAAGACTGGTCATTCAGCTAAAAAAACTCGTTGA 4914 0.4276 MAGSEAVNGDVFPWLKSMPVAPEYRPTAAEFEDPIAYIFKIEKEASRYGICKIIPPFPPSQKKTAIANLNRSLSKSTFTTRQQQIGFCPRKTRPVQRPVWKSGEHYTFQEFEAKAKSFEKNYLNKLNRHNKNNNNNKQHPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHAGEAASLAHTAWNMRGVSRANGSLLRFMKEEIPGVTSPMIYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFIGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPAGIGAEPRSSRLKDKKKGEGETVIKELFVHDVLQNNDLLHVLGKGSAVVILPRSSVDISVCSKLRVGCQQLKVNPGFSINACHSEGMDSSKGYVSDDLMFSRNHGIKQERSFYSVKDKFTTLCERNRISSFDANGNTCTSSSKPLQRDTENETSQGNGLSDQRLFSCVTCGILSFICVAIVQPREPAARYLMSADCSFFNDWVVGSGVSGNKFTAAHEDANIPEPNMYTGRPLGHMLIRKYVYLFGQCPSVWWMKTNAQNDSHDVPVLSSHNQIQTVHRNYEDALNTERGKGNTALALLASAYGNSSDSEEDQGDPDIAVEGHESDAINSTSGRSPSHFRDSHANPMTRLDRGDGIPSENVSYEDFMHRRFECNLSHRSFDHSFEKQDCKITSGVASKNTRTVSNSTSNCSQDAHDAENSLSVKAIVPIDNKNALLVPQSDEDSSRLHVFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKSVAEDLGIDYMWKNIAYRHATKEDEERIQSALDSEDAIPGNGDWAVKLGLNLFYSANLSRSPLYSKQMPYNSVIYHAFGRSSPANSPIEPKVYQRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDAKCLHGWISPDEKIERLESTPKSETNIKKSGRKRKMTVESKRTRKGSFAEKDAVLDNSTEDKPNTQPRKILRSMQARHVERDGTALEGDYSPPYNHRKPISKQKIGTESDAVSDDSLDDNYHMRHRRNFNVKKAKFIDKDVSDDTVDYDSDSQQREELGSKDIEDTERDSISEDSLDIGSLQLHRKTSKSKHAKYISEEDGISDDQMQNRCQKQQRRIPKSRQGKYLAEKDMTSDDQLELNMRKQRRRNPKSRQAKYLAEEDIASDNQLEGHCRKYRSWTPKGRRVKCVAGEDVMSDNQLEDDFQKQQTSFSKRRQNKGIDREVKNVTSDDQLEDRFQKQHRKFPRSRQNKRIHKKVMDDSAESNSHLLHRTPKRKQAKCMDEDDMNSDDEMEDDSHQQHKKTVRSKQSKPKTLQQMKQVNSLQVKNQKSRPVKRGARMLMKSKTPQQVKQPSQSRNKQSGNSREFNSHMEEEEEGGPSTRLRKRLPKADESEGKLKDKQTKRKKVKNTPAGKVSAGHAKTKDEEAEYQCDIEGCTMNFGSKQELMHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKTR* 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00755 1637 Gene3D Classic Zinc Finger 1543 1629 - -
Rops10g00755 1637 Gene3D Cupin 14 354 - -
Rops10g00755 1637 ProSiteProfiles Zinc finger C2H2 type domain profile. 1575 1604 IPR013087 -
Rops10g00755 1637 SUPERFAMILY beta-beta-alpha zinc fingers 1593 1627 IPR036236 -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1403 1423 - -
Rops10g00755 1637 ProSiteProfiles Zinc finger C2H2 type domain profile. 1605 1636 IPR013087 -
Rops10g00755 1637 SUPERFAMILY Clavaminate synthase-like 102 364 - -
Rops10g00755 1637 SMART cupin_9 181 350 IPR003347 -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1010 1113 - -
Rops10g00755 1637 SMART JmjN_1 20 61 IPR003349 -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 702 718 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1459 1493 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1095 1113 - -
Rops10g00755 1637 FunFam Probable lysine-specific demethylase ELF6 1572 1601 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1286 1514 - -
Rops10g00755 1637 ProSitePatterns Zinc finger C2H2 type domain signature. 1547 1569 IPR013087 -
Rops10g00755 1637 ProSiteProfiles Zinc finger C2H2 type domain profile. 1545 1574 IPR013087 -
Rops10g00755 1637 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 1260 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 702 732 - -
Rops10g00755 1637 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Rops10g00755 1637 ProSitePatterns Zinc finger C2H2 type domain signature. 1607 1631 IPR013087 -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1216 1239 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1186 1200 - -
Rops10g00755 1637 Pfam jmjN domain 22 55 IPR003349 -
Rops10g00755 1637 SMART c2h2final6 1605 1631 IPR013087 -
Rops10g00755 1637 SMART c2h2final6 1545 1569 IPR013087 -
Rops10g00755 1637 SMART c2h2final6 1575 1599 IPR013087 -
Rops10g00755 1637 SMART c2h2final6 1522 1544 IPR013087 -
Rops10g00755 1637 ProSiteProfiles JmjC domain profile. 181 350 IPR003347 -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 511 534 - -
Rops10g00755 1637 FunFam Probable lysine-specific demethylase ELF6 14 354 - -
Rops10g00755 1637 SUPERFAMILY beta-beta-alpha zinc fingers 1561 1603 IPR036236 -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1010 1027 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1134 1168 - -
Rops10g00755 1637 Pfam JmjC domain, hydroxylase 215 332 IPR003347 -
Rops10g00755 1637 Coils Coil 1483 1503 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1309 1335 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1134 1251 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1438 1458 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1035 1079 - -
Rops10g00755 1637 FunFam Probable lysine-specific demethylase ELF6 1602 1631 - -
Rops10g00755 1637 MobiDBLite consensus disorder prediction 1347 1377 - -
Rops10g00755 1637 ProSitePatterns Zinc finger C2H2 type domain signature. 1577 1599 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00755 Rops-Chr10 17903343 17904173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00755 822 923 C2H2 Transcription Factor Family AT5G04240 31.373 2.01e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops10g00755 JmjC 3.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00755 - - gmx:100775271 2476.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00755 10 17903343 17904173 Rops10g00755 10 17903343 17904173 ECH