Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00749 ATGGCGAATGATAGTGTGAGATTACTATGCCGCCCGAAACAGCTCCACAAAGGATCCGACCCGAGAATCCATTACTGGTTTGTCGGATCCCCCTTTTTGCCGCCACTTACCATCGTCTCCATCCTCCGATGCATCCACACTCTCCCTTTCTCTTCCTCTTCTCCAGATTTACGCAAAGAATCCGAAGAGCTTCGAACCTTGATTCCGAGAGGCTTTGAAGTCATCGGAGCCCTAGCTTCTGGTGACGACACCGATGCACGTGCGGCCATTGATGCTGCCCGTGGATTGAGGAACCTTCTTTACGGCGAAGCAATAGGGGAAGATCGACCGCTCATCGGAGCTGTTTCCGGTTCCGATTCCGGCGACCTGCGATTCTTTGTATCCGACAGTAGAAAGAACGCGACGAGCCTTGAAGCTGTTACTTCGATCATAGAGGAACAAAATCCGGAGAAGTGTGTGTGGGAGAATGGTTGCTTGCTTCATTGTGAGCTTCCGATTAAGTTGCCACTCTATTACCCTCTCAAAAATCCATCTGATATTGAGAAAGCATATGTACGGGAAACTGAAGCTGTTATTGCCAAGTTAAAAGACCCTCAGGCTGTGTACATATTAGAAACATTGAACAAAACCTCTCCAGATCTACCTCCACCCGCCATAATGCGAGGTGTACAATTGGATTTTCGCACAGACCTCTCCAAGATCAGGCCTCTGGCCAAGGGTGATGATGGCTTTGATGCAAGCTCAGTATCATGTTCGGACTTTTGCATCAACAGTAAAGCAGGCTCACCAGTTTTTTCTGTGGAGAATGCAGATACTATCCAAGTTAGTGTTCTCTTTAATAGCTTAGAACCATCATCAGCATCTGCTGCACCTGTTGCAGAATACCTTCCAGTCCAGGAAGAAGCCAGACTCATTGTTGTGGATATTAAGCTAGATGTACTCTGCTATTCTTCCAGGGATCTTCCACTGAGACACGCAGTTTCAAGTTTAATCATCCCTGGCTTAATTGACCAGTTAAATATACTGCAGAACTCAATGTTGCCTAACCTTTTGGCACAACATCCTCAGCTAAAATCTTATCACTTTAGTCCTCCTGGGTTTCTGCATCCAATAACTGTTTTCTATGAACTGAGTTTTGGGGAGACAGAAATGAAGCAAGTTGAAGTTAGGAGATCCTTGCACTTAAGGTTGGGATTACCTTATGACCGTCCCCTTCTAAGAGTTTCTAATGCCTTGGATTTTTCAAAATTGAAAAACAGTGGTACTGTCTCTCTACCGAAAGGTTCAACTTTGCTCAGAGATGTACACATTGGGATTCCAAGCAGTGGGGTTATTGGGGGAACTGTGTCCCTTGTTCAAGGTTCCTATGAATACTTTCATTATCTTCAGGATGGTTATAATGATTCGGGATGGGGTTGTGCTTATCGCTCTCTCCAGACTATCATTTCATGGTTCAGACTTCAAAACTACTCATCCATTGAAGTTCCTTCTCATAGAGAAATACAGCAGTCGCTTGTTGAGATTGGTGATAAAGATCCTTCTTTTATTGGGTCACGAGAATGGATTGGTGCCATTGAGCTGAGCTTTGTATTGGACAAACTTCTGGGTGTTACTTGCAAAGTCATCAATGTTAGATCTGGAGCTGAGCTTCCAGAAAAATGCCGAGAGCTAGCATTGCACTTTGAGACTCAAAGTACACCTGTTATGATTGGTGGTGGTGTACTTGCATATACTCTCTTGGGAGTGGATTACAATGAATCAAGTGGGGATTGCGCATTTTTAATACTTGATCCACACTATACAGAGGCCCAACATGGTTTGATAGACTTGGATTTAATGGAGGGAACTAACTTCCAATCGGATTTATTGGCCATATCTTGGCCTGATTCTTCTGTCGTGTCCCTTGGTCTAAATCCTGGGCAAAGGGTATTTCAATTTTGGGGATGATTTCCATTCCCATCACTCCCTCTTCTTCCTCAGATGGCATCAAGTGAAGGGTTTCTGACGGATGGGCAGAGGGAATTATTGAAAATTGCGAGTCAGAATGTGGAGAATTTGTCTTCGTCGCCGAAATCTCCATCATCATTGCTTGCTGATCATCATCATCATTTTCATCATCATGTGAGAGCTCCTTCTGGGGGTGGTGGTAAGCCACAAAATGCTGTCAGGCATGTACGCCGATCGCACTCGGGAAAGCTTGTGCGGGTCAAGAAAGACGGTGCTGGTGGTAAGGGCACTTGGGGAAAATTGCTTGATACCGATGGTGAATCTCATATAGACAGGAATGATCCAAACTATGACAGTGGCGAGGAACCTTACCAATTGGTTGGGTCTACTATTACTGACCCGTTGGATCAATTCAAGAAAGCCATAGTATCCATCATAGAGGAATATTTCAGTACTGGGGATGTTGACATGGCTGCATCTGACCTAAGAGAACTTGGGTCAAATGAATATTATCCATACTTCATTAAGCGTCTTGTGTCCATGGCCATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCGGTTTTGCTTTCAGCATTGTATGCTGATGTCATCAGTCCTGCGCAGATTAGGGATGGATTTTTTATGCTTATTGAATCTGCAGATGATCTTGCAGTGGACATACTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGATATTCTTCCTCCAGCCTTTCTTGCCAGGGCCAAGAAGGCTCTTCCAGAATCTTCCAAGGGATATCAGGTAATCCAGACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTCGTGGAGAAGCGATGGGGTGGTAGCACTCACTTCACTGTTGAAGATGTAAAGAAGAGGATTGCTGATTTACTTAGAGAATATGTGGATAGTGGCGACACATTTGAAGCCTGTAGGTGTATACGTGAGTTGGGGGTTTCATTCTTCCATCATGAGGTCGTGAAGAGGGCTCTGGTACTTGACATGGAGATCCGTTCAGCAGAACCTCTCATGTTGAAGCTATTGAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCCAGTCAAATGGTGAAAGGGTTTTCTCGATTGGCAGAAGTACTAGATGATCTTGCGCTCGATATTCCATCCGCTAAAATCTCGTTTCAGTTGTTGGTACCTAAGGCAATATCGGAAGGATGGCTTGATGCATCATTTATGAAACCCTCTGGTGAAGATGGAGATATCCAAGTTGAAGATGAGAAGGTGAGGAAGTACAAAAATGAGGTTGTGACCATGATTCATGAATATTTTCTCTCTGATGACATCCCCGAACTCATTCAAAGTCTTGAAGATCTTGGGGAACAGGAGTATAACCCAATATTTTTGAAGAAGCTAATAACTCTTGCAATGGACAGAAAGAACAGGGAAAAGGAAATGGCATCGGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCAACAGAGGATATGGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACGGCACTGGATATATTGGATGCTTCAAATGAGCTTGCTCTCTTTTTAGCTCGAGCTGTGATTGATGACGTATTGGCCCCTCTGAATTTGGAAGAAATTAGCAGCAGGCTGCCCCCAAAATGCAGTGGGAGTGAAACTGTTCGTGTGGCTCGTTCACTTGTTGCTGCACGTCATGCCGGTGAGAGGCTATTGAGATGTTGGGGTGGTGGGACTGGATGGGCTGTAGAAGATGCTAAGGATAAGATCATGAAGCTCTTGGAGGAGTATGAGAGTGGAGGTGTTGTGAGTGAAGCATGCCAGTGTATTCGTGACATAGGATTGCCTTTCTTTCACCACGAGGTTGTGAAGAAAGCTTTGATTATGGCCATGGAGAAGAAGAATGATAGGATGCTGGATCTGCTGCAGGAATGCTTTAATGAAGGTCTGATCACCATCAATCAGATGACTAAAGGGTTCACCCGAATCAAAGATGGTCTTGATGATCTTGCTTTGGACATTCCAAATGCGAAAGAAAAATTCAGCTTCTATGTGGAGCATGCCCGCACGAAGGGCTGGCTTGTACCATCATTTGATTCGACTACCACAGATGCCTAA 4104 0.4454 MANDSVRLLCRPKQLHKGSDPRIHYWFVGSPFLPPLTIVSILRCIHTLPFSSSSPDLRKESEELRTLIPRGFEVIGALASGDDTDARAAIDAARGLRNLLYGEAIGEDRPLIGAVSGSDSGDLRFFVSDSRKNATSLEAVTSIIEEQNPEKCVWENGCLLHCELPIKLPLYYPLKNPSDIEKAYVRETEAVIAKLKDPQAVYILETLNKTSPDLPPPAIMRGVQLDFRTDLSKIRPLAKGDDGFDASSVSCSDFCINSKAGSPVFSVENADTIQVSVLFNSLEPSSASAAPVAEYLPVQEEARLIVVDIKLDVLCYSSRDLPLRHAVSSLIIPGLIDQLNILQNSMLPNLLAQHPQLKSYHFSPPGFLHPITVFYELSFGETEMKQVEVRRSLHLRLGLPYDRPLLRVSNALDFSKLKNSGTVSLPKGSTLLRDVHIGIPSSGVIGGTVSLVQGSYEYFHYLQDGYNDSGWGCAYRSLQTIISWFRLQNYSSIEVPSHREIQQSLVEIGDKDPSFIGSREWIGAIELSFVLDKLLGVTCKVINVRSGAELPEKCRELALHFETQSTPVMIGGGVLAYTLLGVDYNESSGDCAFLILDPHYTEAQHGLIDLDLMEGTNFQSDLLAISWPDSSVVSLGLNPGQRVFQFWG*FPFPSLPLLPQMASSEGFLTDGQRELLKIASQNVENLSSSPKSPSSLLADHHHHFHHHVRAPSGGGGKPQNAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTDGESHIDRNDPNYDSGEEPYQLVGSTITDPLDQFKKAIVSIIEEYFSTGDVDMAASDLRELGSNEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAKKALPESSKGYQVIQTAEKSYLSAPHHAELVEKRWGGSTHFTVEDVKKRIADLLREYVDSGDTFEACRCIRELGVSFFHHEVVKRALVLDMEIRSAEPLMLKLLKEAAEEGLISSSQMVKGFSRLAEVLDDLALDIPSAKISFQLLVPKAISEGWLDASFMKPSGEDGDIQVEDEKVRKYKNEVVTMIHEYFLSDDIPELIQSLEDLGEQEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDMVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSRLPPKCSGSETVRVARSLVAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDIGLPFFHHEVVKKALIMAMEKKNDRMLDLLQECFNEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFSFYVEHARTKGWLVPSFDSTTTDA* 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00749 1366 Gene3D - 1072 1226 - -
Rops10g00749 1366 Gene3D - 779 926 - -
Rops10g00749 1366 FunFam programmed cell death protein 4 777 928 - -
Rops10g00749 1366 PANTHER PROGRAMMED CELL DEATH 4 664 1360 IPR039778 GO:0045892
Rops10g00749 1366 SMART ma3_7 950 1061 IPR003891 -
Rops10g00749 1366 SMART ma3_7 1247 1356 IPR003891 -
Rops10g00749 1366 SMART ma3_7 1084 1195 IPR003891 -
Rops10g00749 1366 SMART ma3_7 786 897 IPR003891 -
Rops10g00749 1366 Gene3D - 1234 1363 - -
Rops10g00749 1366 Gene3D - 936 1068 - -
Rops10g00749 1366 SUPERFAMILY ARM repeat 1081 1240 IPR016024 -
Rops10g00749 1366 MobiDBLite consensus disorder prediction 750 766 - -
Rops10g00749 1366 MobiDBLite consensus disorder prediction 743 767 - -
Rops10g00749 1366 FunFam programmed cell death protein 4 1073 1227 - -
Rops10g00749 1366 Pfam MA3 domain 1085 1194 IPR003891 -
Rops10g00749 1366 Pfam MA3 domain 1248 1355 IPR003891 -
Rops10g00749 1366 Pfam MA3 domain 951 1061 IPR003891 -
Rops10g00749 1366 Pfam MA3 domain 786 897 IPR003891 -
Rops10g00749 1366 Pfam Peptidase family C78 448 605 IPR012462 -
Rops10g00749 1366 SUPERFAMILY ARM repeat 946 1066 IPR016024 -
Rops10g00749 1366 SUPERFAMILY ARM repeat 1243 1359 IPR016024 -
Rops10g00749 1366 SUPERFAMILY ARM repeat 783 943 IPR016024 -
Rops10g00749 1366 ProSiteProfiles MI domain profile. 785 906 IPR003891 -
Rops10g00749 1366 ProSiteProfiles MI domain profile. 1083 1204 IPR003891 -
Rops10g00749 1366 MobiDBLite consensus disorder prediction 703 731 - -
Rops10g00749 1366 ProSiteProfiles MI domain profile. 1246 1365 IPR003891 -
Rops10g00749 1366 SUPERFAMILY Cysteine proteinases 466 607 IPR038765 -
Rops10g00749 1366 Gene3D - 429 631 - -
Rops10g00749 1366 ProSiteProfiles MI domain profile. 949 1070 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00749 Rops-Chr10 17855684 17867763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00749 786 892 Eukaryotic Initiation Factors Gene Family AT5G57870 24.074 5.07e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00749 - - gmx:100815729 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00749 10 17855684 17867763 Rops10g00749 10 17855684 17867763 ECH