Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00748 ATGATGGAGGGGCGGCGGCATTCAGTTGATGTTCCTATTTCTAAAACTCTTGTGGCACTAAGGAGAGTGAGGTCATTGAGAGATCCATCAACTAATTCTATGACCAAACTTTCTTCTTTGATCGATAACGTGCACTGGGAAAATGGTTCCGGTAATGGGATTTCCCTGCTGTTTCCGGAACCTGCTCGTGCTTGTGATTCTGATGATAATGTTGCTTTCAAACCAAGGAATTCAGGTTTTAAGGGACAAAGAGAACAGAATGCTGCTGATTTTGAATTGAATTATGGCCAGTTGAACTCAAGGCTGAAGGCTAGTGTGATGTCATGTCAGGACAGCCAACAAGATGATGAAAACCGGCGAAATAAATCACCAAGTGAAAGCTGTGGTAGCAACCATGAGGGTAAGGGATTGGATTTGGCTTGTATCATGCCTCCTAGTAATAATTTCAAGAGTGGGGAATCATGCTATGTGGAAACTGCTAGATCATCTCAATTAGGGAGAATAGATCACTCTAAGTCAGCCAAAAAATCTCTAAGGAAAAATCAAGTAAAACCATCAGAAGTAGTGGGGGGTGGTATTGTTAGCCATTTAGGCAGTCCATGCCTTTCTGGTCATGATGCTTTCTCACCCCATGGTGCCTTGGTACATATAAATCAAGATTTTGATGTTCTAGATAATAATGATGATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAGGGAATCAAATCTTTACTGTGAGATAGAAGACCGTCCCTTGATATTGCACCGGGGTGATGACACTGATCTTCATGGACCTAGAAGCATGAGACACAATGGTGGTGAAATTAGTCCGAATTTGGAAACTCCAAGAAGTTTGTCTATGAAATTCAGGCCAAAGTCATTTAGTGATCTGGTAGGACAAAATGTGGTAGTAAGGTCTCTTTTGGGTGCCATCTCCAGAGGAAGGATAGCATCATTTTATCTCTTCCACGGTCCACGTGGTACCGGCAAGACATCTGCATCCAGGATATTTGCTGCCGCACTGAATTGCCTCTCTGTTGAGGAGCAAAGACCATGTGGCTTGTGTAGAGAATGTGTTTCATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTATGAGAATCAATCGTACCGACCAGGTGAAATCCCTTGTTAAGAATGCATGTATCCCTCCAGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGTCAGTTATTGAACGGGGAGACATGGGTGAGCCTTTCAAACAACCTAGAGAGCCTTTCTCAACATGTGGTTTTTGTTATGATCACTCCTGATTTGGATAAGCTTCCTCGAACTGCAATTTCCCGGGCTCAGAGATATCACTTTCCAAAGGTTAAGGATGCTGATATTGCATCCAGATTAGAAAAAATATGTGCCGAAGAAGGTCTTGATTCTGAACAGGCTGCCTTGGACTTCATTGCTGCAAAATCATGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTAGTAAAAAGATCAATATTTCCTTAGTTTATGAGCTTACTGGGATCGTTTCTGATGATGAATTGCTCGATTTACTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTCATATCACAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGAAGTCAGAAGTAGATTTTCTAGTAGATATACCTCGGAAGCAGAACTTCAGAAACTAAGCCATGCAGTGAGAATACTTTCTGAAACTGAGAAACAGTTAAGAATTTCGAAAAATCAAACAACATGGTTCACTGTAGCTCTCCTACAATTAAGCTCTGGAGATTATCCTCCCATGGATGCAAATGATACCAAGTTGTGTTTGGGAGGTGCATTTGATGGAGGGCAGAGCTTGGAGCATCTTGCTACAGCTCAGTGTGATAACAAGTCATATAGATTAGGAGTGCAGGAGGATCACAAAGGAGCATTGGATTCCATATGGTATAAAGCTGCAGAGATATGTCAATCTAGTCAGCTCAAATCTTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCACAGTACATCTGGTCTTGCTGTTGCCGAGTTGGAGTTCCGCCATCGCCACCATGCATCCAAGGCTGAGAAGTCATGGAAATTGATAGCAAGTTCCTTGCAGTTCATATTGGGTTGTAACATTGAGTTGAGGATCACTTATGTACCTCTTAATTCTGATTCTAAGTATGCCAAACTGAAGAGGTCATCCTTAAGCTTCTTTAGTTGTTCACGCAGAATACAACAGAAATCATCATCATCTAATGAACAAGGAAGTGAATCAGACTATGCAGATTACACCTCTCAAAATCCCATGATGCAGGATAAAACTCTAAATTCTTCTGATTGTGGAATGGATGTTGCAACAACTTTGAGAACTTGTGAAGGGAATTTGCTTAGCTCAGGAGAAAGGTTTTTGAATAGGTCTTTTCAAGAGACTAAGGGAACATCATGTTCTGCAGTTGATTCCTCTAAGGAAAAGGGATGCAATTGTGCACATCTAGTTCCATCAATCCTTGATTCAGATAATCAATCAAACTGTTTTCCTCAAACTCTCTGGCTTCAAAAGAAGTTCCGTTCTTCTTCATATTCATCATCCAAGTTGAATTTTCAGGGTACTCAACAGCAGAAAGATTTTGTTTTATCTATCCCAAACTGTACATGA 2799 0.4098 MMEGRRHSVDVPISKTLVALRRVRSLRDPSTNSMTKLSSLIDNVHWENGSGNGISLLFPEPARACDSDDNVAFKPRNSGFKGQREQNAADFELNYGQLNSRLKASVMSCQDSQQDDENRRNKSPSESCGSNHEGKGLDLACIMPPSNNFKSGESCYVETARSSQLGRIDHSKSAKKSLRKNQVKPSEVVGGGIVSHLGSPCLSGHDAFSPHGALVHINQDFDVLDNNDDGCGISCCWSKSPRFRESNLYCEIEDRPLILHRGDDTDLHGPRSMRHNGGEISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSVEEQRPCGLCRECVSFFSGRSKDVKEVDSMRINRTDQVKSLVKNACIPPVSSRFKVFIIDECQLLNGETWVSLSNNLESLSQHVVFVMITPDLDKLPRTAISRAQRYHFPKVKDADIASRLEKICAEEGLDSEQAALDFIAAKSCGSVRDAEMMLDQLSLLSKKINISLVYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILAGKCENGGSEVRSRFSSRYTSEAELQKLSHAVRILSETEKQLRISKNQTTWFTVALLQLSSGDYPPMDANDTKLCLGGAFDGGQSLEHLATAQCDNKSYRLGVQEDHKGALDSIWYKAAEICQSSQLKSFLRKKGKLSSLHVDHSTSGLAVAELEFRHRHHASKAEKSWKLIASSLQFILGCNIELRITYVPLNSDSKYAKLKRSSLSFFSCSRRIQQKSSSSNEQGSESDYADYTSQNPMMQDKTLNSSDCGMDVATTLRTCEGNLLSSGERFLNRSFQETKGTSCSAVDSSKEKGCNCAHLVPSILDSDNQSNCFPQTLWLQKKFRSSSYSSSKLNFQGTQQQKDFVLSIPNCT* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00748 932 CDD HLD_clamp_pol_III_gamma_tau 462 525 IPR045085 -
Rops10g00748 932 Gene3D - 463 525 - -
Rops10g00748 932 MobiDBLite consensus disorder prediction 794 823 - -
Rops10g00748 932 FunFam DNA polymerase III subunit gamma/tau 285 461 - -
Rops10g00748 932 Gene3D - 526 637 - -
Rops10g00748 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 512 IPR027417 -
Rops10g00748 932 NCBIfam DNA polymerase III subunit gamma/tau 289 635 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Rops10g00748 932 MobiDBLite consensus disorder prediction 108 133 - -
Rops10g00748 932 SUPERFAMILY post-AAA+ oligomerization domain-like 526 636 IPR008921 GO:0003677|GO:0006260
Rops10g00748 932 FunFam DNA polymerase III subunit gamma/tau 463 525 - -
Rops10g00748 932 Gene3D - 283 460 IPR027417 -
Rops10g00748 932 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 290 719 - -
Rops10g00748 932 Pfam DNA polymerase III, delta subunit 305 462 - -
Rops10g00748 932 FunFam Protein STICHEL-like 1 isoform C 526 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00748 Rops-Chr10 17850435 17854289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00748 280 527 Core DNA Replication Machinery Family AT1G21690 24.603 5.32e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00748 - - gmx:100819111 1404.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00748 10 17850435 17854289 Rops10g00748 10 17850435 17854289 ECH
Rops2g04092 2 74471683 74476904 Rops10g00748 10 17850435 17854289 PCT