Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00745 ATGACAACCACTCTATTCTCTTTGGTTTTCTTGCTTTCCTCTCTTCTCACCCCAACCCTCATTTCCTCTTCACCTGTCCAAAACCCTGAATTGGTAGTACAAGAGGTTAACAGGAAAATTAATGCCTCAGTAGCTAGGAGGAATTTGGGGTACCTATCGTGTGGAAGTGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCCAATTGGGAGAAGAATAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTTGGCAAGAACGCCATTGGAGGAAGAGATGGTAAGATTTACGTGGTGAACGACGCCGGCGACGACGATCCGGTGAACCCAAAACCGGGTACCCTCCGTCACGCCGTGATCCAAGATGAACCATTATGGATCATCTTTGCAAGAGACATGGTGATCAAGTTAAAGGAAGAACTCATAATGAACTCTTTCAAAACTATTGATGGAAGAGGTGCAAGTGTGCACATTGCTGGTGGTCCATGCATTACTATACAATACGTTACCAATGTTATAATCCATGGTTTACATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGAGCTCCCCACGACACTATGGGTGGAGAACCGTATCGGATGGTGATGGTGTGTCCATCTTTGGTGGAAGTCACGTATGGGTTGATCATTGTTCATTGTCTAATTGTAATGATGGTTTGATCGATGCAATTTATGGGTCCACTGCTATTACCATATCCAACAATTACATGACACAGCATGATAAGGTCATGTTGTTGGGTCATAGTGATTCCTATACCAAAGACAAGAACATGCAAGTCACAATAGCTTTCAACCACTTTGGTGAAGGCCTCGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCTATTGGGGGAAGTGCTAATCCAACCATTAACAGCCAAGGCAACAGATTTGTTGCACCCAATGAGAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCTCCAGAGAGTGAATGGAAGAGTTGGAACTGGAGATCAGAAGGGGACTTGTTGGTAAATGGGGCATTTTTCACTGCATCGGGTGCCGGAGCCTCCTCTAGCTATGCAAGAGCTTCTAGCTTAAGTGCAAGACCATCTGCCCTTGTTGGTTCCTTAACAACAGGTGCTGGTGCACTTAATTGTAGGAAAGGTTCTTCTTGCTGA 1221 0.448 MTTTLFSLVFLLSSLLTPTLISSSPVQNPELVVQEVNRKINASVARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVNDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGLHIHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIYGSTAITISNNYMTQHDKVMLLGHSDSYTKDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNERFSKEVTKHEDAPESEWKSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSALVGSLTTGAGALNCRKGSSC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00745 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Rops10g00745 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Rops10g00745 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Rops10g00745 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Rops10g00745 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Rops10g00745 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Rops10g00745 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Rops10g00745 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Rops10g00745 406 FunFam Pectate lyase 57 399 - -
Rops10g00745 406 SMART amb_all 132 329 IPR002022 -
Rops10g00745 406 SUPERFAMILY Pectin lyase-like 34 401 IPR011050 -
Rops10g00745 406 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
Rops10g00745 406 Gene3D - 57 399 IPR012334 -
Rops10g00745 406 Pfam Pectate lyase 139 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00745 Rops-Chr10 17797537 17800021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00745 6 406 Polysaccharide Lyase AT5G63180 80.645 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00745 K01728 - gmx:100101868 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00745 10 17797537 17800021 Rops10g00745 10 17797537 17800021 ECH
Rops2g04090 2 74425962 74427995 Rops10g00745 10 17797537 17800021 ECH
Rops11g03776 11 71446780 71448787 Rops10g00745 10 17797537 17800021 ECH
Rops10g00745 10 17797537 17800021 Rops2g04090 2 74425962 74427995 ECH
Rops2g04090 2 74425962 74427995 Rops10g00745 10 17797537 17800021 PCT