Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00731 ATGGCAGAATCTTGCCTTATCTCTTCTCCTTCTTCACTTTTCTACAACAAAACCAAACACCCCTTCTTCTCTCTTCCCTCCAAACCCCTCAAACTCCGTTTCCCATTCCTCAACAACCACCCTTCTCCCTCTCTCTCCCTTTCCGCCAGAACCACCCACCACCGTTCTCCTGGGCCGGTGTTCGTGGCCCAAACTTCAGACTGGGCCCAACAAGATGAAGACAACACTCTCACACTGCAAGATGAAGAGGAAGGAGTTGAAGGAGAAGGAGAAGGAGAAGTAGAAGGAGAAGGCGTGAGTGAAACTGAAGCGGGTCTTTCAGATTGGAATTTACCAAACGGTGAAAAAGCAGAAATTGAAGGTGGTGGTGAAGAAGAAGGAGAAGGGGGTTTTGAGGAACCACCTGAAGATGCTAAATTGTTTGTTGGGAACTTGCCTTTTGATGTTGATAGTCAGAAATTGGCAATGCTTTTTGAACAGGCTGGAACTGTTGAGATTGCTGAGGTTATTTATAACAGGGAAACTGACCAGAGTCGTGGCTTTGGATTTGTATCCATGAGTACTGTTGAGGAAGCTGATCAAGCTGTGGAGAAATTCAACCGCTATGATTATGATGGAAGACTGTTGACTGTAAATAAGGCTTCTCCAAGAGGATCTCGGCCTGAACGCCCACCTCGTACCTTTGCACCTGTCTTTAGAGTCTACGTTGGTAACTTGCCATGGGATATTGATAATGCTCGGCTGGAGCAAGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCTCGGGTAGTCTATGATAGAGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGACGGGAGAACAATAAGAGTGAATGTTGCAGAGGATAGGCCCAGGCGTGGCTCCTTTTGA 954 0.4675 MAESCLISSPSSLFYNKTKHPFFSLPSKPLKLRFPFLNNHPSPSLSLSARTTHHRSPGPVFVAQTSDWAQQDEDNTLTLQDEEEGVEGEGEGEVEGEGVSETEAGLSDWNLPNGEKAEIEGGGEEEGEGGFEEPPEDAKLFVGNLPFDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVSMSTVEEADQAVEKFNRYDYDGRLLTVNKASPRGSRPERPPRTFAPVFRVYVGNLPWDIDNARLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRTIRVNVAEDRPRRGSF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00731 317 MobiDBLite consensus disorder prediction 80 98 - -
Rops10g00731 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Rops10g00731 317 CDD RRM2_NsCP33_like 233 308 - -
Rops10g00731 317 Gene3D - 221 317 IPR012677 -
Rops10g00731 317 SMART rrm1_1 139 212 IPR000504 GO:0003723
Rops10g00731 317 SMART rrm1_1 233 306 IPR000504 GO:0003723
Rops10g00731 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Rops10g00731 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Rops10g00731 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 304 IPR000504 GO:0003723
Rops10g00731 317 Gene3D - 63 220 IPR012677 -
Rops10g00731 317 PANTHER OS02G0815200 PROTEIN 21 312 - -
Rops10g00731 317 MobiDBLite consensus disorder prediction 80 136 - -
Rops10g00731 317 SUPERFAMILY RNA-binding domain, RBD 225 315 IPR035979 GO:0003676
Rops10g00731 317 FunFam 31 kDa ribonucleoprotein, chloroplastic 63 221 - -
Rops10g00731 317 FunFam 31 kDa ribonucleoprotein, chloroplastic 222 316 - -
Rops10g00731 317 SUPERFAMILY RNA-binding domain, RBD 134 226 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00731 Rops-Chr10 17658040 17660960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00731 136 314 Eukaryotic Initiation Factors Gene Family AT3G16380 35.079 4.77e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00731 - - gmx:100810381 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04081 2 74302383 74304988 Rops10g00731 10 17658040 17660960 ECH
Rops10g00731 10 17658040 17660960 Rops10g00731 10 17658040 17660960 ECH
Rops2g04081 2 74302383 74304988 Rops10g00731 10 17658040 17660960 PCT