Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00705 ATGGAGATGGAGACGGAGGCGACCAAGGAAAACCCCCAAACCGATCAAAACGGCGCCGCTTCGCAACTCTCACCTCCTTCTTCGACGCTTCCCGAGGACAAAGTTCTCGTCCCTGTCGAGGTTTGCTTAAAACCTTCCAGCACTGCTCCGATTCACGATGTTCGTTCAGCCGTTGAACGGATGCTTGAAAAGAGGAGTTTGAGCTACATTGATGGACCTATTCCCGTGCCCCCTGATGAACCGTTTCTTGCAGATATTGTGCAAAGAATTTGCGTTTGTGATGCAGATGAAGGGATGCACAATGATAACGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTTCACGTCTTTCAGCTTAGTGAGGAAGGACCATGTGAGGATATTAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTTTAAAGCAACGGTTGTTACGTTATGCGGCGAGTGCTTTGCTCTTTACCGAAAAGGGTGTTGATCCATTCCTTGTTTCATGGAACCGCATAATTCTTTTGCATGGACCCCCTGGAACTGGAAAGACGTCTTTATGTAAAGCATTAGCCCAGAAACTATCAATCCGATTCAATTCGAGATACCCTCAGAGCCAGCTCGTTGAAGTGAATGCACATTCATTGTTCAGTAAATGGTTCTCCGAAAGTGGAAAGCTGGTTGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTGGTATTTGTTTTAATTGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTGGTCAATGCATTACTAACTCAGATGGACAAGCTAAAATCATCCCCAAATGTGATAATTCTAACCACATCTAACATAACTACTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCGCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCTTGCTTGCAGGAACTGATTCGTACAGGGATATTAACTAGTTTTCAGGATTGTAAGAATGTCATGCTTCCAAATTATGCTAGTGCAAAGGAGAGGTTGAATGCACCAGATTTTCATGAGGCTGCTACATCCATGCAATTGTGCAAGCAACTATTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCAGTTGCAAATCCTTTTGATTGCAACCCTATTAAGTTCTTGTGTACAATGATTGAAACAGCTAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1359 0.4305 MEMETEATKENPQTDQNGAASQLSPPSSTLPEDKVLVPVEVCLKPSSTAPIHDVRSAVERMLEKRSLSYIDGPIPVPPDEPFLADIVQRICVCDADEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQSQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTSFQDCKNVMLPNYASAKERLNAPDFHEAATSMQLCKQLFETAEACEGMSGRSLRKLPFLAHAAVANPFDCNPIKFLCTMIETAKRERSELPD* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00705 452 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 14 449 IPR044539 -
Rops10g00705 452 SMART AAA_5 186 338 IPR003593 GO:0016887
Rops10g00705 452 MobiDBLite consensus disorder prediction 1 31 - -
Rops10g00705 452 FunFam pachytene checkpoint protein 2 homolog 130 352 - -
Rops10g00705 452 Pfam ATPase family associated with various cellular activities (AAA) 190 335 IPR003959 GO:0005524|GO:0016887
Rops10g00705 452 CDD RecA-like_Pch2-like 136 334 - -
Rops10g00705 452 ProSitePatterns AAA-protein family signature. 308 327 IPR003960 GO:0005524|GO:0016887
Rops10g00705 452 Gene3D - 129 353 IPR027417 -
Rops10g00705 452 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 190 208 IPR001270 GO:0005524
Rops10g00705 452 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 304 318 IPR001270 GO:0005524
Rops10g00705 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 422 IPR027417 -
Rops10g00705 452 MobiDBLite consensus disorder prediction 10 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00705 Rops-Chr10 17298083 17304786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00705 135 353 Calmodulin-binding Proteins AT3G56690 30.357 4.24e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00705 K22399 - gmx:100795009 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00705 10 17298083 17304786 Rops10g00705 10 17298083 17304786 ECH