Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00693 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAGGATGAGAAGCTATTCGATCACATAACAAGGTTTGGTGTTGGATGCTGGAGTTCAGTTCCCAAACAAGCTGGGTTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGGATGTTTTCTCAACAAGAGGAGGATCTTATAATCAGTCTTCATGAAGTTCTTGGAAATAGGTGGGCTCAAATTGCAGCACAGTTGCCAGGGAGAACAGATAATGAGATAAAAAACTTCTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCAACTACACACAAGCCTCTCCTTAGTACTGAAACTCACATAAAGGAAGAAAAAGAGAGCACAGATTCACCATCCATGCTAATACCACTGTCTCAAACATTTGCCTCCTCAAAGTCACAGGGGTCAGCACTTGTAATGAACAATTCAAATTACCATGATGGGGGGCTAAGTGTAACAGCAGCTTCAAGAGAAGTTTTCATGAGTGAACCAGCATTGGATCACTTGTCCTACTTTGAATTCCAAATGGGTGTTGCTGACTGTGGTTATAATTCAAGTGTGAGTCATTATCATCCAACAAGCCTTAAACAATTTGATCACAATCAGCTGGGAATGGGAACCAATTCAAGCTATGGATTCTCTTCAATGCCATGTCTAGATAGTTCTGATCATGGGAACATGTCGGTGACAACAGGGTTTTCTTCATATAACAATTCATCTTCCAAAATCAGTTCTTTGTTGTTGAAAGAAAGTTGCAGCCATAGCTCAAGCATGAGTATTTATCCAGGAACAGGGTGTCAAATGATGGAAAATGCAACAGGGTTCTCATGGGAGAACAAGTTGGATCCTTTGTTACAGTTTCAAGTCAAATCTGAAGAGTTCAAGACAAGTTCATGGCATGAAGGGCAGATGCTGACTCAGAATTCATTAGATTTCACTAGCTATCCATTAATGTCATTGTCAGAAGATCTAAGTGGAGCAAGTGTTGATGTATTCCAGCAGATATGA 1092 0.4038 MGRHSCCLKQKLRKGLWSPEEDEKLFDHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLLSTETHIKEEKESTDSPSMLIPLSQTFASSKSQGSALVMNNSNYHDGGLSVTAASREVFMSEPALDHLSYFEFQMGVADCGYNSSVSHYHPTSLKQFDHNQLGMGTNSSYGFSSMPCLDSSDHGNMSVTTGFSSYNNSSSKISSLLLKESCSHSSSMSIYPGTGCQMMENATGFSWENKLDPLLQFQVKSEEFKTSSWHEGQMLTQNSLDFTSYPLMSLSEDLSGASVDVFQQI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00693 363 FunFam Transcription factor MYB86 69 139 - -
Rops10g00693 363 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops10g00693 363 CDD SANT 70 109 IPR001005 -
Rops10g00693 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops10g00693 363 FunFam Myb transcription factor 11 67 - -
Rops10g00693 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops10g00693 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops10g00693 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops10g00693 363 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops10g00693 363 CDD SANT 17 61 IPR001005 -
Rops10g00693 363 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops10g00693 363 Gene3D - 11 67 - -
Rops10g00693 363 PANTHER MYB DOMAIN PROTEIN 55 1 290 - -
Rops10g00693 363 Gene3D - 69 145 - -
Rops10g00693 363 SMART sant 66 114 IPR001005 -
Rops10g00693 363 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00693 Rops-Chr10 17043947 17045739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00693 1 134 MYB Transcription Factor Family AT4G01680 83.582 4.36e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g00693 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00693 K09422 - gmx:100811140 491.886